RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 EFCAB14O75071 495 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 TM4SF4P48230 202 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 KPNA1P52294 538 aaPredicted RBP9.41□□□□□ -0.9
LIG4-202ENST00000405925 VCPP55072 806 aaKnown RBP9.41□□□□□ -0.9
LIG4-202ENST00000405925 STAT4Q14765 748 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 NAPEPLDQ6IQ20 393 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 FUT10Q6P4F1 479 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 C3orf62Q6ZUJ4 267 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 TAS1R3Q7RTX0 852 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 RASSF3Q86WH2 238 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 CREG2Q8IUH2 290 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 SLC4A11Q8NBS3 891 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 ZNF784Q8NCA9 323 aaPredicted RBP9.41□□□□□ -0.9
LIG4-202ENST00000405925 PPHLN1Q8NEY8 458 aaKnown RBP9.41□□□□□ -0.9
LIG4-202ENST00000405925 RUBCNQ92622 972 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 EMID1Q96A84 441 aaPredicted RBP9.41□□□□□ -0.9
LIG4-202ENST00000405925 CINPQ9BW66 212 aaPredicted RBP9.41□□□□□ -0.9
LIG4-202ENST00000405925 DPEP3Q9H4B8 488 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 LY75O60449 1722 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 NCANO14594 1321 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 MYBPHLA2RUH7 354 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 GOLGA8RI6L899 631 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 CBX4O00257 560 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 XPO1O14980 1071 aaKnown RBP9.41□□□□□ -0.9
LIG4-202ENST00000405925 EOMESO95936 686 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 CKBP12277 381 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 CYP3A5P20815 502 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 LONRF1Q17RB8 773 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 KLC3Q6P597 504 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 TRMT10CQ7L0Y3 403 aaKnown RBP9.41□□□□□ -0.9
LIG4-202ENST00000405925 NUP93Q8N1F7 819 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 GPATCH11Q8N954 259 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 LRRN4CLQ8ND94 238 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 EXOC4Q96A65 974 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 PLCD4Q9BRC7 762 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 SNRNP25Q9BV90 132 aaKnown RBP9.41□□□□□ -0.9
LIG4-202ENST00000405925 NFKBIZQ9BYH8 718 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 SUDS3Q9H7L9 328 aaPredicted RBP9.41□□□□□ -0.9
LIG4-202ENST00000405925 CNGB3Q9NQW8 809 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 SAE1Q9UBE0 346 aaPredicted RBP9.41□□□□□ -0.9
LIG4-202ENST00000405925 TSR3Q9UJK0 312 aaKnown RBP9.41□□□□□ -0.9
LIG4-202ENST00000405925 STXBP5LQ9Y2K9 1186 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 A0A0U1RQF3 1178 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 CARNS1A5YM72 827 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 PPEF2O14830 753 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 ADH1AP07327 375 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 GLI1P08151 1106 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 CYBAP13498 195 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 LMO2P25791 158 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 ATP5C1P36542 298 aaKnown RBP9.41□□□□□ -0.9
LIG4-202ENST00000405925 OXCT1P55809 520 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 JAM2P57087 298 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 NUGGCQ68CJ6 796 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 SDCCAG8Q86SQ7 713 aaPredicted RBP9.41□□□□□ -0.9
LIG4-202ENST00000405925 TRIM42Q8IWZ5 723 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 CDK5RAP1Q96SZ6 601 aaKnown RBP9.41□□□□□ -0.9
LIG4-202ENST00000405925 FOXP3Q9BZS1 431 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 CIPCQ9C0C6 399 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 C11orf49Q9H6J7 331 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 CHST7Q9NS84 486 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 UBP1Q9NZI7 540 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 PDE2AO00408 941 aaPredicted RBP9.41□□□□□ -0.9
LIG4-202ENST00000405925 PSMD3O43242 534 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 RAMP2O60895 175 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 CDH16O75309 829 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 GPC4O75487 556 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 ERBB2P04626 1255 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 SPATA31D3P0C874 917 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 LAG3P18627 525 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 FLT3P36888 993 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 GLUD2P49448 558 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 SPARCL1Q14515 664 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 ZSCAN26Q16670 478 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 TRIM60Q495X7 471 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 SPATA31D4Q6ZUB0 917 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 RNF135Q8IUD6 432 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 KATNAL2Q8IYT4 538 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 SPPL2BQ8TCT7 592 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 SCG3Q8WXD2 468 aaKnown RBP9.41□□□□□ -0.9
LIG4-202ENST00000405925 SEZ6LQ9BYH1 1024 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 LHX5Q9H2C1 402 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 RBM22Q9NW64 420 aaKnown RBP eCLIP9.41□□□□□ -0.9
LIG4-202ENST00000405925 UXTQ9UBK9 157 aaPredicted RBP9.41□□□□□ -0.9
LIG4-202ENST00000405925 MID2Q9UJV3 735 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 DNPEPQ9ULA0 475 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 MYH8P13535 1937 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 XYLBO75191 536 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 ANXA9O76027 345 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 CXCL14O95715 111 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 CLTBP09497 229 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 CSH1P0DML2 217 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 CSH2P0DML3 217 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 KDELR1P24390 212 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 OR1E1P30953 314 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 MRPS5P82675 430 aaKnown RBP9.4□□□□□ -0.9
LIG4-202ENST00000405925 NR1H3Q13133 447 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 SLC29A2Q14542 456 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 MTFR1Q15390 333 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 TIGD5Q53EQ6 642 aa9.4□□□□□ -0.9
LIG4-202ENST00000405925 PMF1Q6P1K2 205 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms