RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 H0YHG0 523 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 SEPT4O43236 478 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 MGEA5O60502 916 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 CYBAP13498 195 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 NPR3P17342 541 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 ARL4AP40617 200 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 AP1B1Q10567 949 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 MPP2Q14168 576 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 GKAP1Q5VSY0 366 aaPredicted RBP11.57□□□□□ -0.56
TCOF1-203ENST00000394269 NUGGCQ68CJ6 796 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 CASC4Q6P4E1 433 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 DRICH1Q6PGQ1 229 aaPredicted RBP11.57□□□□□ -0.56
TCOF1-203ENST00000394269 FAM47EQ6ZV65 393 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 CROCCP2Q86T23 111 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 STKLD1Q8NE28 680 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 PCED1BQ96HM7 432 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 DNAI2Q9GZS0 605 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 C12orf65Q9H3J6 166 aaKnown RBP11.57□□□□□ -0.56
TCOF1-203ENST00000394269 NRP1O14786 923 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 GPR182O15218 404 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 BDNFP23560 247 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 ELK3P41970 407 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 CACNA2D1P54289 1103 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 STAT4Q14765 748 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 PCBP1Q15365 356 aaKnown RBP eCLIP11.57□□□□□ -0.56
TCOF1-203ENST00000394269 TIGD5Q53EQ6 642 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 ARHGAP17Q68EM7 881 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 FBF1Q8TES7 1133 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 DUSP16Q9BY84 665 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 NRDE2Q9H7Z3 1164 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 ALG13Q9NP73 1137 aaKnown RBP11.57□□□□□ -0.56
TCOF1-203ENST00000394269 CRTAC1Q9NQ79 661 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 GDAP2Q9NXN4 497 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 IKBKGQ9Y6K9 419 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 A0A1W2PPM1 405 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 YJEFN3A6XGL0 299 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 FAM155AB1AL88 458 aaPredicted RBP11.57□□□□□ -0.56
TCOF1-203ENST00000394269 E7ENQ6 273 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 ATP5DP30049 168 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 GJA9P57773 515 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 SEPT7Q16181 437 aaKnown RBP11.57□□□□□ -0.56
TCOF1-203ENST00000394269 KCNT2Q6UVM3 1135 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 PPP1R21Q6ZMI0 780 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 CLEC20AQ6ZU45 233 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 CACNA2D3Q8IZS8 1091 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 PPP1R10Q96QC0 940 aaKnown RBP11.57□□□□□ -0.56
TCOF1-203ENST00000394269 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.56□□□□□ -0.56
TCOF1-203ENST00000394269 SETSIPP0DME0 302 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 STIP1P31948 543 aaKnown RBP11.56□□□□□ -0.56
TCOF1-203ENST00000394269 L1CAMP32004 1257 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 DEUP1Q05D60 604 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 SLC10A2Q12908 348 aaPredicted RBP11.56□□□□□ -0.56
TCOF1-203ENST00000394269 PDK2Q15119 407 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 NOMO1Q15155 1222 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 EFHC1Q5JVL4 640 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 GPRIN1Q7Z2K8 1008 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 IGDCC3Q8IVU1 814 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 SEC16BQ96JE7 1060 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 FAM129AQ9BZQ8 928 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 TRPV6Q9H1D0 765 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 FGFR1OP2Q9NVK5 253 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 PRG3Q9Y2Y8 225 aaPredicted RBP11.56□□□□□ -0.56
TCOF1-203ENST00000394269 Q9Y3F1 56 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 TTLL3Q9Y4R7 772 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 CA4P22748 312 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 PAQR9Q6ZVX9 377 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 SLC26A9Q7LBE3 791 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 PCGF5Q86SE9 256 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 TP53INP2Q8IXH6 220 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 KCTD15Q96SI1 283 aaPredicted RBP11.56□□□□□ -0.56
TCOF1-203ENST00000394269 SIK2Q9H0K1 926 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 SLC38A7Q9NVC3 462 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 SHOC2Q9UQ13 582 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 SNX10Q9Y5X0 201 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 SIP14410 1827 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 ALOX15BO15296 676 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 ITGB1P05556 798 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 OR4Q2P0C623 313 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 NEFHP12036 1026 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 MATKP42679 507 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 ACADSBP45954 432 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 ARPP19P56211 112 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 GPX6P59796 221 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 CRADDP78560 199 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 MRPS5P82675 430 aaKnown RBP11.56□□□□□ -0.56
TCOF1-203ENST00000394269 DENND5BQ6ZUT9 1274 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 AGAP3Q96P47 875 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 CSPG4P5Q96PW8 444 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 TMEM209Q96SK2 561 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 TRABDQ9H4I3 376 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 ETNK1Q9HBU6 452 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 TMEM30AQ9NV96 361 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 DDIT4Q9NX09 232 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.56□□□□□ -0.56
TCOF1-203ENST00000394269 SAMD15Q9P1V8 674 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 EFR3BQ9Y2G0 817 aa11.56□□□□□ -0.56
TCOF1-203ENST00000394269 SRGAP2BP0DMP2 458 aa11.55□□□□□ -0.56
TCOF1-203ENST00000394269 PTPN7P35236 360 aa11.55□□□□□ -0.56
TCOF1-203ENST00000394269 GRIA1P42261 906 aa11.55□□□□□ -0.56
TCOF1-203ENST00000394269 MSH2P43246 934 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms