RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 ZNF778Q96MU6 729 aa16.98■□□□□ 0.31
SDC4-201ENST00000372733 RNF157Q96PX1 679 aa16.98■□□□□ 0.31
SDC4-201ENST00000372733 APOL6Q9BWW8 343 aa16.98■□□□□ 0.31
SDC4-201ENST00000372733 ELOVL4Q9GZR5 314 aa16.98■□□□□ 0.31
SDC4-201ENST00000372733 EBF3Q9H4W6 596 aa16.98■□□□□ 0.31
SDC4-201ENST00000372733 ETNK2Q9NVF9 386 aa16.98■□□□□ 0.31
SDC4-201ENST00000372733 BRWD3Q6RI45 1802 aa16.98■□□□□ 0.31
SDC4-201ENST00000372733 A0A088AWK7 358 aa16.98■□□□□ 0.31
SDC4-201ENST00000372733 EGFRP00533 1210 aa16.98■□□□□ 0.31
SDC4-201ENST00000372733 PTPN11Q06124 597 aaPredicted RBP16.98■□□□□ 0.31
SDC4-201ENST00000372733 TARBP2Q15633 366 aaKnown RBP16.98■□□□□ 0.31
SDC4-201ENST00000372733 UBA3Q8TBC4 463 aa16.98■□□□□ 0.31
SDC4-201ENST00000372733 KLC2Q9H0B6 622 aa16.98■□□□□ 0.31
SDC4-201ENST00000372733 GPAMQ9HCL2 828 aa16.98■□□□□ 0.31
SDC4-201ENST00000372733 SLC17A6Q9P2U8 582 aa16.98■□□□□ 0.31
SDC4-201ENST00000372733 UTRNP46939 3433 aa16.97■□□□□ 0.31
SDC4-201ENST00000372733 ARHGAP42A6NI28 874 aa16.97■□□□□ 0.31
SDC4-201ENST00000372733 SDR42E2A6NKP2 422 aa16.97■□□□□ 0.31
SDC4-201ENST00000372733 ITM2AO43736 263 aa16.97■□□□□ 0.31
SDC4-201ENST00000372733 SORBS2O94875 1100 aaKnown RBP16.97■□□□□ 0.31
SDC4-201ENST00000372733 ZNF143P52747 638 aaPredicted RBP16.97■□□□□ 0.31
SDC4-201ENST00000372733 FAM47CQ5HY64 1035 aa16.97■□□□□ 0.31
SDC4-201ENST00000372733 ZNF667Q5HYK9 610 aa16.97■□□□□ 0.31
SDC4-201ENST00000372733 C16orf46Q6P387 395 aa16.97■□□□□ 0.31
SDC4-201ENST00000372733 TMEM192Q8IY95 271 aa16.97■□□□□ 0.31
SDC4-201ENST00000372733 ADGRF2Q8IZF7 708 aa16.97■□□□□ 0.31
SDC4-201ENST00000372733 PPP1R14CQ8TAE6 165 aa16.97■□□□□ 0.31
SDC4-201ENST00000372733 RXFP2Q8WXD0 754 aa16.97■□□□□ 0.31
SDC4-201ENST00000372733 ANKRD36BP1Q96IX9 119 aa16.97■□□□□ 0.31
SDC4-201ENST00000372733 FAM192AQ9GZU8 254 aa16.97■□□□□ 0.31
SDC4-201ENST00000372733 SIX4Q9UIU6 781 aa16.97■□□□□ 0.31
SDC4-201ENST00000372733 SOX13Q9UN79 622 aa16.97■□□□□ 0.31
SDC4-201ENST00000372733 A0A1B0GVG6 124 aa16.97■□□□□ 0.31
SDC4-201ENST00000372733 KLHL33A6NCF5 533 aa16.97■□□□□ 0.31
SDC4-201ENST00000372733 ANKRD33BA6NCL7 494 aa16.97■□□□□ 0.31
SDC4-201ENST00000372733 PRPSAP2O60256 369 aa16.97■□□□□ 0.31
SDC4-201ENST00000372733 GPD1P21695 349 aa16.97■□□□□ 0.31
SDC4-201ENST00000372733 WASHC5Q12768 1159 aa16.97■□□□□ 0.31
SDC4-201ENST00000372733 RALGPS1Q5JS13 557 aa16.97■□□□□ 0.31
SDC4-201ENST00000372733 TMCO4Q5TGY1 634 aa16.97■□□□□ 0.31
SDC4-201ENST00000372733 KYAT3Q6YP21 454 aaKnown RBP16.97■□□□□ 0.31
SDC4-201ENST00000372733 LRRC71Q8N4P6 559 aa16.97■□□□□ 0.31
SDC4-201ENST00000372733 CCDC33Q8N5R6 958 aa16.97■□□□□ 0.31
SDC4-201ENST00000372733 PQLC3Q8N755 202 aa16.97■□□□□ 0.31
SDC4-201ENST00000372733 RNF149Q8NC42 400 aa16.97■□□□□ 0.31
SDC4-201ENST00000372733 ACAD9Q9H845 621 aa16.97■□□□□ 0.31
SDC4-201ENST00000372733 DNAJC16Q9Y2G8 782 aa16.97■□□□□ 0.31
SDC4-201ENST00000372733 TRDMT1O14717 391 aaKnown RBP16.96■□□□□ 0.31
SDC4-201ENST00000372733 PDE5AO76074 875 aa16.96■□□□□ 0.31
SDC4-201ENST00000372733 RTN3O95197 1032 aaPredicted RBP16.96■□□□□ 0.31
SDC4-201ENST00000372733 CXCL8P10145 99 aa16.96■□□□□ 0.31
SDC4-201ENST00000372733 PDGFRAP16234 1089 aa16.96■□□□□ 0.31
SDC4-201ENST00000372733 CRHR1P34998 444 aa16.96■□□□□ 0.31
SDC4-201ENST00000372733 HMGCS2P54868 508 aa16.96■□□□□ 0.31
SDC4-201ENST00000372733 RPL10AP62906 217 aaKnown RBP16.96■□□□□ 0.31
SDC4-201ENST00000372733 TUBB3Q13509 450 aa16.96■□□□□ 0.31
SDC4-201ENST00000372733 HIC1Q14526 733 aa16.96■□□□□ 0.31
SDC4-201ENST00000372733 TBCCQ15814 346 aa16.96■□□□□ 0.31
SDC4-201ENST00000372733 ZNF534Q76KX8 674 aa16.96■□□□□ 0.31
SDC4-201ENST00000372733 UNC5BQ8IZJ1 945 aa16.96■□□□□ 0.31
SDC4-201ENST00000372733 CNPY3Q9BT09 278 aa16.96■□□□□ 0.31
SDC4-201ENST00000372733 BCO2Q9BYV7 579 aa16.96■□□□□ 0.31
SDC4-201ENST00000372733 SHCBP1LQ9BZQ2 653 aa16.96■□□□□ 0.31
SDC4-201ENST00000372733 MYOZ2Q9NPC6 264 aa16.96■□□□□ 0.31
SDC4-201ENST00000372733 FAM159BA6NKW6 160 aa16.96■□□□□ 0.3
SDC4-201ENST00000372733 B4GALT5O43286 388 aa16.96■□□□□ 0.3
SDC4-201ENST00000372733 AOC1P19801 751 aa16.96■□□□□ 0.3
SDC4-201ENST00000372733 UBA1P22314 1058 aaKnown RBP16.96■□□□□ 0.3
SDC4-201ENST00000372733 IL4RP24394 825 aa16.96■□□□□ 0.3
SDC4-201ENST00000372733 GSTT1P30711 240 aa16.96■□□□□ 0.3
SDC4-201ENST00000372733 GRIA1P42261 906 aa16.96■□□□□ 0.3
SDC4-201ENST00000372733 EFNA5P52803 228 aa16.96■□□□□ 0.3
SDC4-201ENST00000372733 EPHB1P54762 984 aa16.96■□□□□ 0.3
SDC4-201ENST00000372733 BACE1P56817 501 aa16.96■□□□□ 0.3
SDC4-201ENST00000372733 BCAR1P56945 870 aa16.96■□□□□ 0.3
SDC4-201ENST00000372733 CNTN2Q02246 1040 aa16.96■□□□□ 0.3
SDC4-201ENST00000372733 FASTKD1Q53R41 847 aaKnown RBP16.96■□□□□ 0.3
SDC4-201ENST00000372733 EFHC1Q5JVL4 640 aa16.96■□□□□ 0.3
SDC4-201ENST00000372733 EEF1DP3Q658K8 133 aa16.96■□□□□ 0.3
SDC4-201ENST00000372733 SCYL2Q6P3W7 929 aa16.96■□□□□ 0.3
SDC4-201ENST00000372733 RNF111Q6ZNA4 994 aa16.96■□□□□ 0.3
SDC4-201ENST00000372733 DENND5BQ6ZUT9 1274 aa16.96■□□□□ 0.3
SDC4-201ENST00000372733 CCDC124Q96CT7 223 aaKnown RBP16.96■□□□□ 0.3
SDC4-201ENST00000372733 RTP4Q96DX8 246 aa16.96■□□□□ 0.3
SDC4-201ENST00000372733 S100A14Q9HCY8 104 aa16.96■□□□□ 0.3
SDC4-201ENST00000372733 C2CD4BA6NLJ0 364 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 METTL18O95568 372 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 NFICP08651 508 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 GPD2P43304 727 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 CDK18Q07002 472 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 LAMTOR4Q0VGL1 99 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 ACAP1Q15027 740 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 SURF1Q15526 300 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 SMAD1Q15797 465 aaKnown RBP16.95■□□□□ 0.3
SDC4-201ENST00000372733 CA9Q16790 459 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 CNPY1Q3B7I2 92 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 CFAP157Q5JU67 520 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 FAM183BPQ6ZVS7 135 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 DHDDSQ86SQ9 333 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 OR6Y1Q8NGX8 325 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms