RNA–Protein interactions for RNA: ENST00000372216.8

COL4A6-202, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-202ENST00000372216 UBXN6Q9BZV1 441 aa10.1□□□□□ -0.79
COL4A6-202ENST00000372216 MICAL2O94851 1124 aa10.1□□□□□ -0.79
COL4A6-202ENST00000372216 LSM8O95777 96 aaKnown RBP10.1□□□□□ -0.79
COL4A6-202ENST00000372216 CHN1P15882 459 aa10.1□□□□□ -0.79
COL4A6-202ENST00000372216 TGM2P21980 687 aa10.1□□□□□ -0.79
COL4A6-202ENST00000372216 YWHAQP27348 245 aa10.1□□□□□ -0.79
COL4A6-202ENST00000372216 TM4SF1P30408 202 aa10.1□□□□□ -0.79
COL4A6-202ENST00000372216 PLA2G4AP47712 749 aa10.1□□□□□ -0.79
COL4A6-202ENST00000372216 CSNK2BP67870 215 aa10.1□□□□□ -0.79
COL4A6-202ENST00000372216 TRIP4Q15650 581 aaPredicted RBP10.1□□□□□ -0.79
COL4A6-202ENST00000372216 SLC39A12Q504Y0 691 aa10.1□□□□□ -0.79
COL4A6-202ENST00000372216 SCARA3Q6AZY7 606 aa10.1□□□□□ -0.79
COL4A6-202ENST00000372216 DTX3LQ8TDB6 740 aa10.1□□□□□ -0.79
COL4A6-202ENST00000372216 WNK4Q96J92 1243 aa10.1□□□□□ -0.79
COL4A6-202ENST00000372216 FICDQ9BVA6 458 aa10.1□□□□□ -0.79
COL4A6-202ENST00000372216 FRMD8P1Q9BZ68 369 aaPredicted RBP10.1□□□□□ -0.79
COL4A6-202ENST00000372216 KCTD10Q9H3F6 313 aa10.1□□□□□ -0.79
COL4A6-202ENST00000372216 SMPD4Q9NXE4 827 aa10.1□□□□□ -0.79
COL4A6-202ENST00000372216 PLA2G4CQ9UP65 541 aa10.1□□□□□ -0.79
COL4A6-202ENST00000372216 RASSF10A6NK89 507 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 PSMD12O00232 456 aaPredicted RBP10.09□□□□□ -0.79
COL4A6-202ENST00000372216 AIM2O14862 343 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 DYRK3O43781 588 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 CABYRO75952 493 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 AKAP3O75969 853 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 SNRPAP09012 282 aaKnown RBP10.09□□□□□ -0.79
COL4A6-202ENST00000372216 C16orf72Q14CZ0 275 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 SNAP47Q5SQN1 464 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 MROH9Q5TGP6 573 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 SLC13A5Q86YT5 568 aaPredicted RBP10.09□□□□□ -0.79
COL4A6-202ENST00000372216 SYTL1Q8IYJ3 562 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 GRAMD1AQ96CP6 724 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 SMARCD1Q96GM5 515 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 VPS9D1Q9Y2B5 631 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 SLC9A8Q9Y2E8 581 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 GAKO14976 1311 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 POU4F1Q01851 419 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 DGKZQ13574 1117 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 TFDP3Q5H9I0 405 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 CENPPQ6IPU0 288 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 MTFMTQ96DP5 389 aaKnown RBP10.09□□□□□ -0.79
COL4A6-202ENST00000372216 ADAM2Q99965 735 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 VTI1BQ9UEU0 232 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 RICTORQ6R327 1708 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 CLASP2O75122 1294 aaKnown RBP10.09□□□□□ -0.79
COL4A6-202ENST00000372216 SMIM10L2AP0DMW4 78 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 SMIM10L2BP0DMW5 78 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 VCLP18206 1134 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 UBA1P22314 1058 aaKnown RBP10.09□□□□□ -0.79
COL4A6-202ENST00000372216 ADIGQ0VDE8 80 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 C15orf52Q6ZUT6 534 aaKnown RBP10.09□□□□□ -0.79
COL4A6-202ENST00000372216 VGLL2Q8N8G2 317 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 FBXO44Q9H4M3 255 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 NT5MQ9NPB1 228 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 PDGFCQ9NRA1 345 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 SLC15A5A6NIM6 579 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 AP2B1P63010 937 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 GUCY1A3Q02108 690 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 CAPRIN2Q6IMN6 1127 aaKnown RBP10.09□□□□□ -0.79
COL4A6-202ENST00000372216 TTI2Q6NXR4 508 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 TRMT11Q7Z4G4 463 aaKnown RBP10.09□□□□□ -0.79
COL4A6-202ENST00000372216 CERS5Q8N5B7 392 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 OR2W6PQ8NHA6 318 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 RXFP2Q8WXD0 754 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 TSPAN16Q9UKR8 245 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 RNF112Q9ULX5 631 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 CHURC1-FNTBB4DL54 471 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 F8VZ95 297 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 XYLBO75191 536 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 MARSP56192 900 aaKnown RBP10.09□□□□□ -0.79
COL4A6-202ENST00000372216 TBX4P57082 545 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 AMPD2Q01433 879 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 ZNF284Q2VY69 593 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 TTLL9Q3SXZ7 439 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 TMEM119Q4V9L6 283 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 CCDC60Q8IWA6 550 aaPredicted RBP10.09□□□□□ -0.79
COL4A6-202ENST00000372216 EMC1Q8N766 993 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 B3GALNT2Q8NCR0 500 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 PACSIN1Q9BY11 444 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 FOXP3Q9BZS1 431 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 PALMDQ9NP74 551 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 RAB23Q9ULC3 237 aa10.09□□□□□ -0.79
COL4A6-202ENST00000372216 PLOD1Q02809 727 aaPredicted RBP10.08□□□□□ -0.8
COL4A6-202ENST00000372216 SGCGQ13326 291 aa10.08□□□□□ -0.8
COL4A6-202ENST00000372216 EARS2Q5JPH6 523 aaKnown RBP10.08□□□□□ -0.8
COL4A6-202ENST00000372216 CXCL17Q6UXB2 119 aa10.08□□□□□ -0.8
COL4A6-202ENST00000372216 SPATA21Q7Z572 469 aa10.08□□□□□ -0.8
COL4A6-202ENST00000372216 DDX42Q86XP3 938 aaKnown RBP eCLIP10.08□□□□□ -0.8
COL4A6-202ENST00000372216 EXD1Q8NHP7 514 aa10.08□□□□□ -0.8
COL4A6-202ENST00000372216 ACKR2O00590 384 aa10.08□□□□□ -0.8
COL4A6-202ENST00000372216 TBC1D4O60343 1298 aa10.08□□□□□ -0.8
COL4A6-202ENST00000372216 PGK1P00558 417 aa10.08□□□□□ -0.8
COL4A6-202ENST00000372216 CCDC130P13994 396 aa10.08□□□□□ -0.8
COL4A6-202ENST00000372216 NAA30Q147X3 362 aaPredicted RBP10.08□□□□□ -0.8
COL4A6-202ENST00000372216 ACOX1Q15067 660 aa10.08□□□□□ -0.8
COL4A6-202ENST00000372216 MTFR1Q15390 333 aa10.08□□□□□ -0.8
COL4A6-202ENST00000372216 MRNIPQ6NTE8 343 aa10.08□□□□□ -0.8
COL4A6-202ENST00000372216 CLYBLQ8N0X4 340 aa10.08□□□□□ -0.8
COL4A6-202ENST00000372216 CYP4X1Q8N118 509 aa10.08□□□□□ -0.8
COL4A6-202ENST00000372216 TMEM199Q8N511 208 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms