RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 FAM171BQ6P995 826 aa13.72□□□□□ -0.21
SQSTM1-201ENST00000360718 CLEC20AQ6ZU45 233 aa13.72□□□□□ -0.21
SQSTM1-201ENST00000360718 TAS1R1Q7RTX1 841 aa13.72□□□□□ -0.21
SQSTM1-201ENST00000360718 CCDC91Q7Z6B0 441 aa13.72□□□□□ -0.21
SQSTM1-201ENST00000360718 SCUBE3Q8IX30 993 aa13.72□□□□□ -0.21
SQSTM1-201ENST00000360718 RHOT1Q8IXI2 618 aa13.72□□□□□ -0.21
SQSTM1-201ENST00000360718 C7orf61Q8IZ16 206 aa13.72□□□□□ -0.21
SQSTM1-201ENST00000360718 EMC1Q8N766 993 aa13.72□□□□□ -0.21
SQSTM1-201ENST00000360718 NIPA2Q8N8Q9 360 aa13.72□□□□□ -0.21
SQSTM1-201ENST00000360718 CLEC4CQ8WTT0 213 aa13.72□□□□□ -0.21
SQSTM1-201ENST00000360718 MYLPFQ96A32 169 aa13.72□□□□□ -0.21
SQSTM1-201ENST00000360718 SMARCD1Q96GM5 515 aa13.72□□□□□ -0.21
SQSTM1-201ENST00000360718 ZNF317Q96PQ6 595 aaPredicted RBP13.72□□□□□ -0.21
SQSTM1-201ENST00000360718 SLC40A1Q9NP59 571 aa13.72□□□□□ -0.21
SQSTM1-201ENST00000360718 PATJQ8NI35 1801 aa13.72□□□□□ -0.21
SQSTM1-201ENST00000360718 CCT8L1PA6NM43 557 aa13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 PAPSS1O43252 624 aaPredicted RBP13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 PSTPIP1O43586 416 aa13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 AP1G2O75843 785 aa13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 SYN1P17600 705 aa13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 RDXP35241 583 aaKnown RBP13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 ALDH7A1P49419 539 aaKnown RBP13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 IFI35P80217 286 aaPredicted RBP13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 SIX1Q15475 284 aaPredicted RBP13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 TAF5Q15542 800 aa13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 FAM171A1Q5VUB5 890 aa13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 FAM35AQ86V20 835 aa13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 PIGZQ86VD9 579 aa13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 ZMIZ2Q8NF64 920 aa13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 ATXN2LQ8WWM7 1075 aaKnown RBP13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 CCT6BQ92526 530 aa13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 KCNK16Q96T55 309 aa13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 SMOQ99835 787 aa13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 VN1R3Q9BXE9 311 aa13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 LRRC4Q9HBW1 653 aa13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 LRRC4CQ9HCJ2 640 aa13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 RNF8O76064 485 aa13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 OAZ2O95190 189 aa13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 LCP1P13796 627 aa13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 TCF4P15884 667 aa13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 RPL34P49207 117 aaKnown RBP13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 MAP3K7CLP57077 242 aa13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 ACAP1Q15027 740 aa13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 TNFAIP8L3Q5GJ75 292 aa13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 VARS2Q5ST30 1063 aaKnown RBP13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 FUT10Q6P4F1 479 aa13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 C4orf50Q6ZRC1 276 aa13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 ZNF365Q70YC5 407 aa13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 PIGWQ7Z7B1 504 aa13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 CEP57Q86XR8 500 aa13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 KHSRPQ92945 711 aaKnown RBP eCLIP13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 SERPINB12Q96P63 405 aa13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 CXXC1Q9P0U4 656 aaPredicted RBP13.71□□□□□ -0.21
SQSTM1-201ENST00000360718 KIAA1671Q9BY89 1806 aa13.71□□□□□ -0.22
SQSTM1-201ENST00000360718 TCRBV7S2A1N4TA0A589 114 aa13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 GRAP2O75791 330 aa13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 BAIAP3O94812 1187 aa13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 EFEMP2O95967 443 aa13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 GAS8O95995 478 aa13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 GPD1P21695 349 aa13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 SCNN1AP37088 669 aa13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 CETN2P41208 172 aa13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 SCTRP47872 440 aa13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 KCNJ1P48048 391 aa13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 AUHQ13825 339 aaKnown RBP13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 RTP2Q5QGT7 225 aa13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 SPOUT1Q5T280 376 aaKnown RBP13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 ZFYVE27Q5T4F4 411 aa13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 OLFML1Q6UWY5 402 aa13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 GPRIN1Q7Z2K8 1008 aa13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 CCDC25Q86WR0 208 aa13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 DCP1BQ8IZD4 617 aaKnown RBP13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 SIX6OS1Q8N1H7 587 aa13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 KCTD13Q8WZ19 329 aa13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 ADAM7Q9H2U9 754 aa13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 ASNSD1Q9NWL6 643 aa13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 F8VP50 259 aa13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 DNAJC8O75937 253 aaPredicted RBP13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 VIMP08670 466 aaKnown RBP13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 PDGFRAP16234 1089 aa13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 FGFR3P22607 806 aa13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 MRPL58Q14197 206 aaKnown RBP13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 HADHQ16836 314 aaKnown RBP13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 EFHC1Q5JVL4 640 aa13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 RSPO2Q6UXX9 243 aaPredicted RBP13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 SPATA2LQ8IUW3 424 aaPredicted RBP13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 EPS8L3Q8TE67 593 aaKnown RBP13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 NDRG1Q92597 394 aaKnown RBP13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 SNF8Q96H20 258 aa13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 ASIC3Q9UHC3 531 aa13.7□□□□□ -0.22
SQSTM1-201ENST00000360718 MYO16Q9Y6X6 1858 aa13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 GSTA1P08263 222 aa13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 BDNFP23560 247 aa13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 NDUFV1P49821 464 aa13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 ZNF143P52747 638 aaPredicted RBP13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 TAS2R40P59535 323 aa13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 KRT17Q04695 432 aa13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 FPGSQ05932 587 aa13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 ADIGQ0VDE8 80 aa13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 XRCC4Q13426 336 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms