RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 LCE4AQ5TA78 99 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 LAIR1Q6GTX8 287 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 SWSAP1Q6NVH7 229 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 GLB1LQ6UWU2 654 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 AGMOQ6ZNB7 445 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 INTS8Q75QN2 995 aaKnown RBP7.47□□□□□ -1.21
VPS13A-201ENST00000355766 METTL13Q8N6R0 699 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 LINC01465Q8N7H1 131 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 SPC24Q8NBT2 197 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 CACTINQ8WUQ7 758 aaKnown RBP7.47□□□□□ -1.21
VPS13A-201ENST00000355766 TCP11Q8WWU5 503 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 DDX1Q92499 740 aaKnown RBP7.47□□□□□ -1.21
VPS13A-201ENST00000355766 SYN2Q92777 582 aaPredicted RBP7.47□□□□□ -1.21
VPS13A-201ENST00000355766 CEP170P1Q96L14 293 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 IFT74Q96LB3 600 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 ACCSQ96QU6 501 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 MAP7D2Q96T17 732 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 DNAJC7Q99615 494 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 DPH2Q9BQC3 489 aaPredicted RBP7.47□□□□□ -1.21
VPS13A-201ENST00000355766 NFKBIZQ9BYH8 718 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 FAM126AQ9BYI3 521 aaPredicted RBP7.47□□□□□ -1.21
VPS13A-201ENST00000355766 TTYH3Q9C0H2 523 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 NDST4Q9H3R1 872 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 LTB4R2Q9NPC1 389 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 MRPL17Q9NRX2 175 aaKnown RBP7.47□□□□□ -1.21
VPS13A-201ENST00000355766 AGPAT3Q9NRZ7 376 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 DMAC2Q9NW81 257 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 ZNHIT6Q9NWK9 470 aaKnown RBP7.47□□□□□ -1.21
VPS13A-201ENST00000355766 ARHGAP28Q9P2N2 729 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 TJP2Q9UDY2 1190 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 DNAJB4Q9UDY4 337 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 ARMCX3Q9UH62 379 aaPredicted RBP7.47□□□□□ -1.21
VPS13A-201ENST00000355766 DPP7Q9UHL4 492 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 MYO6Q9UM54 1294 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 AKT3Q9Y243 479 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 MTF2Q9Y483 593 aaPredicted RBP7.47□□□□□ -1.21
VPS13A-201ENST00000355766 MYH11P35749 1972 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 C2orf16Q68DN1 1984 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 KAT6AQ92794 2004 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 CEP295Q9C0D2 2601 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 ANKRD11Q6UB99 2663 aaPredicted RBP7.46□□□□□ -1.21
VPS13A-201ENST00000355766 IGKV6-21A0A0C4DH24 114 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 NPHP3-ACAD11A0A0J9YXS1 232 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 USO1O60763 962 aaKnown RBP7.46□□□□□ -1.22
VPS13A-201ENST00000355766 MAFO75444 373 aaPredicted RBP7.46□□□□□ -1.22
VPS13A-201ENST00000355766 RFPL2O75678 378 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 GYPCP04921 128 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 URODP06132 367 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 PROS1P07225 676 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 DARSP14868 501 aaKnown RBP7.46□□□□□ -1.22
VPS13A-201ENST00000355766 FGFR4P22455 802 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 HOXD13P35453 343 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 PSMC2P35998 433 aaKnown RBP7.46□□□□□ -1.22
VPS13A-201ENST00000355766 RPS9P46781 194 aaKnown RBP7.46□□□□□ -1.22
VPS13A-201ENST00000355766 LIG3P49916 1009 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 CASP5P51878 434 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 GPC5P78333 572 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 ZBED6P86452 979 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 UBXN1Q04323 297 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 RNASELQ05823 741 aaKnown RBP7.46□□□□□ -1.22
VPS13A-201ENST00000355766 POU5F1BQ06416 359 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 ADAM9Q13443 819 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 MXD4Q14582 209 aaPredicted RBP7.46□□□□□ -1.22
VPS13A-201ENST00000355766 EMC2Q15006 297 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 PCBP1Q15365 356 aaKnown RBP eCLIP7.46□□□□□ -1.22
VPS13A-201ENST00000355766 MEA1Q16626 185 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 CCDC40Q4G0X9 1142 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 NOMO2Q5JPE7 1267 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 ARMCX5Q6P1M9 558 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 TSSK4Q6SA08 328 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 MPZL3Q6UWV2 235 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 RSPO2Q6UXX9 243 aaPredicted RBP7.46□□□□□ -1.22
VPS13A-201ENST00000355766 TMTC1Q8IUR5 882 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 TC2NQ8N9U0 490 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 TMEM161BQ8NDZ6 487 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 ZNF397Q8NF99 534 aaPredicted RBP7.46□□□□□ -1.22
VPS13A-201ENST00000355766 FGF14Q92915 247 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 HPS3Q969F9 1004 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 CEP89Q96ST8 783 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 HERC2P3Q9BVR0 1158 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 TRAIPQ9BWF2 469 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 ZHX3Q9H4I2 956 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 KIAA1586Q9HCI6 787 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 PLCB1Q9NQ66 1216 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 ZDHHC7Q9NXF8 308 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 TAB2Q9NYJ8 693 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 RAB23Q9ULC3 237 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 CAPN11Q9UMQ6 739 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 INPP5FQ9Y2H2 1132 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 FRMD4BQ9Y2L6 1034 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 UTP18Q9Y5J1 556 aaKnown RBP eCLIP7.46□□□□□ -1.22
VPS13A-201ENST00000355766 ZFP37Q9Y6Q3 630 aaPredicted RBP7.46□□□□□ -1.22
VPS13A-201ENST00000355766 ASPMQ8IZT6 3477 aa7.46□□□□□ -1.22
VPS13A-201ENST00000355766 FRYQ5TBA9 3013 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 MAGEB2O15479 319 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 TEX28O15482 410 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 ASAP2O43150 1006 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 TGFB1I1O43294 461 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 ZSCAN12O43309 604 aa7.45□□□□□ -1.22
VPS13A-201ENST00000355766 SOD2P04179 222 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms