RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 WDR72Q3MJ13 1102 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 FNDC3BQ53EP0 1204 aaKnown RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 CELF3Q5SZQ8 465 aaKnown RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 KRT79Q5XKE5 535 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 CGB2Q6NT52 195 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 ALKBH5Q6P6C2 394 aaKnown RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 PLPPR4Q7Z2D5 763 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 APOBEC3FQ8IUX4 373 aaKnown RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 SCUBE1Q8IWY4 988 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 NELFCDQ8IXH7 590 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 PPIL6Q8IXY8 311 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 SMAP1Q8IYB5 467 aaPredicted RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 GSPT2Q8IYD1 628 aaKnown RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 PCDH19Q8TAB3 1148 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 TAS1R2Q8TE23 839 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 SH3RF2Q8TEC5 729 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 HVCN1Q96D96 273 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 ZMAT2Q96NC0 199 aaKnown RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 TWNKQ96RR1 684 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 WRNIP1Q96S55 665 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 YIPF4Q9BSR8 244 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 MRPL4Q9BYD3 311 aaKnown RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 GTPBP4Q9BZE4 634 aaKnown RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 GPR62Q9BZJ7 368 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 SPATC1LQ9H0A9 340 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 THAP2Q9H0W7 228 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 TAF1DQ9H5J8 278 aaPredicted RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 VIPAS39Q9H9C1 493 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 PARVGQ9HBI0 331 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 ZCCHC17Q9NP64 241 aaKnown RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 CHST7Q9NS84 486 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 FAM207AQ9NSI2 230 aaPredicted RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 SUCLA2Q9P2R7 463 aaPredicted RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 HMGXB4Q9UGU5 601 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 CCPG1Q9ULG6 757 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 DAAM1Q9Y4D1 1078 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 NUB1Q9Y5A7 615 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 NPFFR2Q9Y5X5 522 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 DOCK6Q96HP0 2047 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 COL27A1Q8IZC6 1860 aaPredicted RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 GOLGA6L4A6NEF3 574 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 N4BP3O15049 544 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 INPPL1O15357 1258 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 TGM5O43548 720 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 PALMO75781 387 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 FAM155BO75949 473 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 PRKD3O94806 890 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 GFPT2O94808 682 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 GNA14O95837 355 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 CFBP00751 764 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 MMEP08473 750 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 TMEM253P0C7T8 217 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 GTF2H1P32780 548 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 PTPN7P35236 360 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 PSMC5P62195 406 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 PRKCEQ02156 737 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 GCNT1Q02742 428 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 POU5F1BQ06416 359 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 C2orf54Q08AI8 447 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 GALEQ14376 348 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 PDCD1Q15116 288 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 WHAMMP3Q1A5X7 153 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 TRIM71Q2Q1W2 868 aaKnown RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 ACBD5Q5T8D3 534 aaPredicted RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 DAB2IPQ5VWQ8 1189 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 PLEKHA7Q6IQ23 1121 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 C11orf63Q6NUN7 778 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 ZNF574Q6ZN55 896 aaPredicted RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 TPH2Q8IWU9 490 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 CNTD1Q8N815 330 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 PRELID2Q8N945 189 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 GLIS1Q8NBF1 620 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 CHURC1Q8WUH1 139 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 TFAP2BQ92481 460 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 TLCD1Q96CP7 247 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 TRIM44Q96DX7 344 aaPredicted RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 ASIC4Q96FT7 647 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 CCDC120Q96HB5 630 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 PIWIL1Q96J94 861 aaKnown RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 LSM14BQ9BX40 385 aaKnown RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 C17orf75Q9HAS0 396 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 RNF146Q9NTX7 359 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 TBC1D22BQ9NU19 505 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 PSD3Q9NYI0 1048 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 OGFRQ9NZT2 677 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 CGNQ9P2M7 1197 aaKnown RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 GULP1Q9UBP9 304 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 CNOT8Q9UFF9 292 aaKnown RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 TRHDEQ9UKU6 1024 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 JRKLQ9Y4A0 524 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP2.47□□□□□ -2.01
VPS54-202ENST00000354504 C2orf71A6NGG8 1288 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 GLTPD2A6NH11 291 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 GOLGA6L6A8MZA4 724 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 KIF2AO00139 706 aaPredicted RBP2.47□□□□□ -2.01
VPS54-202ENST00000354504 AURKAO14965 403 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 B4GALT5O43286 388 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 RAD51CO43502 376 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 OPA1O60313 960 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 B4GALT3O60512 393 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms