RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 ANKRD52Q8NB46 1076 aa22.61■■□□□ 1.21
SHMT1-202ENST00000352886 TBC1D31Q96DN5 1066 aa22.61■■□□□ 1.21
SHMT1-202ENST00000352886 C11orf84Q9BUA3 381 aaPredicted RBP22.61■■□□□ 1.21
SHMT1-202ENST00000352886 POPDC2Q9HBU9 364 aa22.61■■□□□ 1.21
SHMT1-202ENST00000352886 ALG13Q9NP73 1137 aaKnown RBP22.61■■□□□ 1.21
SHMT1-202ENST00000352886 PNPLA8Q9NP80 782 aa22.61■■□□□ 1.21
SHMT1-202ENST00000352886 TXLNGQ9NUQ3 528 aa22.61■■□□□ 1.21
SHMT1-202ENST00000352886 ZC3H7BQ9UGR2 993 aaKnown RBP22.61■■□□□ 1.21
SHMT1-202ENST00000352886 UBQLN1Q9UMX0 589 aaKnown RBP22.61■■□□□ 1.21
SHMT1-202ENST00000352886 SMIM10L2AP0DMW4 78 aa22.6■■□□□ 1.21
SHMT1-202ENST00000352886 SMIM10L2BP0DMW5 78 aa22.6■■□□□ 1.21
SHMT1-202ENST00000352886 ALADP13716 330 aa22.6■■□□□ 1.21
SHMT1-202ENST00000352886 DARSP14868 501 aaKnown RBP22.6■■□□□ 1.21
SHMT1-202ENST00000352886 FYB2Q5VWT5 728 aa22.6■■□□□ 1.21
SHMT1-202ENST00000352886 IQSEC1Q6DN90 963 aa22.6■■□□□ 1.21
SHMT1-202ENST00000352886 CDKL3Q8IVW4 592 aaPredicted RBP22.6■■□□□ 1.21
SHMT1-202ENST00000352886 CTAGE3PQ8IX95 158 aa22.6■■□□□ 1.21
SHMT1-202ENST00000352886 CCDC33Q8N5R6 958 aa22.6■■□□□ 1.21
SHMT1-202ENST00000352886 APOPT1Q96IL0 206 aa22.6■■□□□ 1.21
SHMT1-202ENST00000352886 KLK14Q9P0G3 267 aa22.6■■□□□ 1.21
SHMT1-202ENST00000352886 AP4E1Q9UPM8 1137 aa22.6■■□□□ 1.21
SHMT1-202ENST00000352886 ZNF487B1APH4 448 aa22.6■■□□□ 1.21
SHMT1-202ENST00000352886 FAM155BO75949 473 aa22.6■■□□□ 1.21
SHMT1-202ENST00000352886 C1QAP02745 245 aa22.6■■□□□ 1.21
SHMT1-202ENST00000352886 PYGBP11216 843 aa22.6■■□□□ 1.21
SHMT1-202ENST00000352886 GTF2A2P52657 109 aa22.6■■□□□ 1.21
SHMT1-202ENST00000352886 SLC10A2Q12908 348 aaPredicted RBP22.6■■□□□ 1.21
SHMT1-202ENST00000352886 CBLBQ13191 982 aa22.6■■□□□ 1.21
SHMT1-202ENST00000352886 PPM1NQ8N819 430 aa22.6■■□□□ 1.21
SHMT1-202ENST00000352886 NPLOC4Q8TAT6 608 aa22.6■■□□□ 1.21
SHMT1-202ENST00000352886 CENPIQ92674 756 aaPredicted RBP22.6■■□□□ 1.21
SHMT1-202ENST00000352886 MANSC1Q9H8J5 431 aa22.6■■□□□ 1.21
SHMT1-202ENST00000352886 KPNA7A9QM74 516 aa22.59■■□□□ 1.21
SHMT1-202ENST00000352886 SPTLC1O15269 473 aa22.59■■□□□ 1.21
SHMT1-202ENST00000352886 DYNC1LI2O43237 492 aaPredicted RBP22.59■■□□□ 1.21
SHMT1-202ENST00000352886 CYP2C9P11712 490 aa22.59■■□□□ 1.21
SHMT1-202ENST00000352886 GNL1P36915 607 aaPredicted RBP22.59■■□□□ 1.21
SHMT1-202ENST00000352886 MAGEA6P43360 314 aa22.59■■□□□ 1.21
SHMT1-202ENST00000352886 CDC42EP1Q00587 391 aa22.59■■□□□ 1.21
SHMT1-202ENST00000352886 ZNF618Q5T7W0 954 aa22.59■■□□□ 1.21
SHMT1-202ENST00000352886 SH2D5Q6ZV89 423 aa22.59■■□□□ 1.21
SHMT1-202ENST00000352886 SLC26A11Q86WA9 606 aa22.59■■□□□ 1.21
SHMT1-202ENST00000352886 PTPRN2Q92932 1015 aa22.59■■□□□ 1.21
SHMT1-202ENST00000352886 MYCBPQ99417 103 aaPredicted RBP22.59■■□□□ 1.21
SHMT1-202ENST00000352886 NRCAMQ92823 1304 aa22.59■■□□□ 1.21
SHMT1-202ENST00000352886 A8MUI8 341 aa22.59■■□□□ 1.21
SHMT1-202ENST00000352886 PIRO00625 290 aa22.59■■□□□ 1.21
SHMT1-202ENST00000352886 TARSP26639 723 aaKnown RBP22.59■■□□□ 1.21
SHMT1-202ENST00000352886 NEK3P51956 506 aa22.59■■□□□ 1.21
SHMT1-202ENST00000352886 PREPLQ4J6C6 727 aaPredicted RBP22.59■■□□□ 1.21
SHMT1-202ENST00000352886 SLC45A4Q5BKX6 768 aa22.59■■□□□ 1.21
SHMT1-202ENST00000352886 VPS52Q8N1B4 723 aa22.59■■□□□ 1.21
SHMT1-202ENST00000352886 CRYBG2Q8N1P7 616 aa22.59■■□□□ 1.21
SHMT1-202ENST00000352886 FAM111AQ96PZ2 611 aa22.59■■□□□ 1.21
SHMT1-202ENST00000352886 MTMR10Q9NXD2 777 aa22.59■■□□□ 1.21
SHMT1-202ENST00000352886 PIN4Q9Y237 131 aaKnown RBP22.59■■□□□ 1.21
SHMT1-202ENST00000352886 SMIM28A0A1B0GU29 152 aa22.58■■□□□ 1.21
SHMT1-202ENST00000352886 CXorf49A8MYA2 514 aaPredicted RBP22.58■■□□□ 1.21
SHMT1-202ENST00000352886 METTL18O95568 372 aa22.58■■□□□ 1.21
SHMT1-202ENST00000352886 SLC18A2Q05940 514 aa22.58■■□□□ 1.21
SHMT1-202ENST00000352886 OVGP1Q12889 678 aa22.58■■□□□ 1.21
SHMT1-202ENST00000352886 WLSQ5T9L3 541 aa22.58■■□□□ 1.21
SHMT1-202ENST00000352886 LRRC6Q86X45 466 aa22.58■■□□□ 1.21
SHMT1-202ENST00000352886 CCDC185Q8N715 623 aa22.58■■□□□ 1.21
SHMT1-202ENST00000352886 PLAC1Q9HBJ0 212 aa22.58■■□□□ 1.21
SHMT1-202ENST00000352886 TRIP12Q14669 1992 aaPredicted RBP22.58■■□□□ 1.21
SHMT1-202ENST00000352886 ECM2O94769 699 aaPredicted RBP22.58■■□□□ 1.2
SHMT1-202ENST00000352886 ETV4P43268 484 aa22.58■■□□□ 1.2
SHMT1-202ENST00000352886 PLEKHG4Q58EX7 1191 aa22.58■■□□□ 1.2
SHMT1-202ENST00000352886 TTC39BQ5VTQ0 682 aaPredicted RBP22.58■■□□□ 1.2
SHMT1-202ENST00000352886 SLC2A14Q8TDB8 520 aa22.58■■□□□ 1.2
SHMT1-202ENST00000352886 TMEM40Q8WWA1 233 aa22.58■■□□□ 1.2
SHMT1-202ENST00000352886 KCTD15Q96SI1 283 aaPredicted RBP22.58■■□□□ 1.2
SHMT1-202ENST00000352886 SNX25Q9H3E2 840 aa22.58■■□□□ 1.2
SHMT1-202ENST00000352886 GOLGA2P5Q9HBQ8 144 aa22.58■■□□□ 1.2
SHMT1-202ENST00000352886 SMIM35A0A1B0GVV1 85 aa22.57■■□□□ 1.2
SHMT1-202ENST00000352886 SLC15A5A6NIM6 579 aa22.57■■□□□ 1.2
SHMT1-202ENST00000352886 ATP5HO75947 161 aa22.57■■□□□ 1.2
SHMT1-202ENST00000352886 F2P00734 622 aa22.57■■□□□ 1.2
SHMT1-202ENST00000352886 CD4P01730 458 aa22.57■■□□□ 1.2
SHMT1-202ENST00000352886 DHRS4L1P0CG22 281 aa22.57■■□□□ 1.2
SHMT1-202ENST00000352886 TROVE2P10155 538 aaKnown RBP eCLIP22.57■■□□□ 1.2
SHMT1-202ENST00000352886 KCNT2Q6UVM3 1135 aa22.57■■□□□ 1.2
SHMT1-202ENST00000352886 NLRP9Q7RTR0 991 aa22.57■■□□□ 1.2
SHMT1-202ENST00000352886 PLEKHH3Q7Z736 793 aa22.57■■□□□ 1.2
SHMT1-202ENST00000352886 ANKRD23Q86SG2 305 aa22.57■■□□□ 1.2
SHMT1-202ENST00000352886 MCUQ8NE86 351 aa22.57■■□□□ 1.2
SHMT1-202ENST00000352886 DNAJB3Q8WWF6 145 aa22.57■■□□□ 1.2
SHMT1-202ENST00000352886 TTC17Q96AE7 1141 aa22.57■■□□□ 1.2
SHMT1-202ENST00000352886 CSPG4P5Q96PW8 444 aa22.57■■□□□ 1.2
SHMT1-202ENST00000352886 TMEM237Q96Q45 408 aa22.57■■□□□ 1.2
SHMT1-202ENST00000352886 HAO1Q9UJM8 370 aa22.57■■□□□ 1.2
SHMT1-202ENST00000352886 DCTN4Q9UJW0 460 aa22.57■■□□□ 1.2
SHMT1-202ENST00000352886 TRIM49D1C9J1S8 452 aa22.57■■□□□ 1.2
SHMT1-202ENST00000352886 C2CD2LO14523 706 aa22.57■■□□□ 1.2
SHMT1-202ENST00000352886 ZFXP17010 805 aaPredicted RBP22.57■■□□□ 1.2
SHMT1-202ENST00000352886 PCBP1Q15365 356 aaKnown RBP eCLIP22.57■■□□□ 1.2
SHMT1-202ENST00000352886 PRAMEF19Q5SWL8 479 aa22.57■■□□□ 1.2
SHMT1-202ENST00000352886 C4orf22Q6V702 233 aa22.57■■□□□ 1.2
SHMT1-202ENST00000352886 ARCQ7LC44 396 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms