RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 ACAP1Q15027 740 aa5.81□□□□□ -1.48
CSDE1-202ENST00000339438 TMED2Q15363 201 aa5.81□□□□□ -1.48
CSDE1-202ENST00000339438 ARL13BQ3SXY8 428 aa5.81□□□□□ -1.48
CSDE1-202ENST00000339438 CTU1Q7Z7A3 348 aaKnown RBP5.81□□□□□ -1.48
CSDE1-202ENST00000339438 CCDC65Q8IXS2 484 aa5.81□□□□□ -1.48
CSDE1-202ENST00000339438 VPS52Q8N1B4 723 aa5.81□□□□□ -1.48
CSDE1-202ENST00000339438 GTF3C2Q8WUA4 911 aaPredicted RBP5.81□□□□□ -1.48
CSDE1-202ENST00000339438 TMEM174Q8WUU8 243 aa5.81□□□□□ -1.48
CSDE1-202ENST00000339438 DHX38Q92620 1227 aaKnown RBP5.81□□□□□ -1.48
CSDE1-202ENST00000339438 SNF8Q96H20 258 aa5.81□□□□□ -1.48
CSDE1-202ENST00000339438 CTRCQ99895 268 aa5.81□□□□□ -1.48
CSDE1-202ENST00000339438 MRPL46Q9H2W6 279 aaKnown RBP5.81□□□□□ -1.48
CSDE1-202ENST00000339438 QPCTLQ9NXS2 382 aa5.81□□□□□ -1.48
CSDE1-202ENST00000339438 SLC17A7Q9P2U7 560 aa5.81□□□□□ -1.48
CSDE1-202ENST00000339438 PPME1Q9Y570 386 aa5.81□□□□□ -1.48
CSDE1-202ENST00000339438 TP53BP1Q12888 1972 aaPredicted RBP5.8□□□□□ -1.48
CSDE1-202ENST00000339438 USP17L10C9JJH3 530 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 AQP9O43315 295 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 CASP5P51878 434 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 GJA9P57773 515 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 FASTKD3Q14CZ7 662 aaKnown RBP5.8□□□□□ -1.48
CSDE1-202ENST00000339438 CCNG2Q16589 344 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 FAM26DQ5JW98 314 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 CENPSQ8N2Z9 138 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 BANPQ8N9N5 519 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 CD99L2Q8TCZ2 262 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 SLC35C1Q96A29 364 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 NSMCE3Q96MG7 304 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 GCNAQ96QF7 691 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 RBM15Q96T37 977 aaKnown RBP eCLIP5.8□□□□□ -1.483e-7■■■■□ 23.4
CSDE1-202ENST00000339438 WDR83Q9BRX9 315 aaKnown RBP5.8□□□□□ -1.48
CSDE1-202ENST00000339438 MRPL1Q9BYD6 325 aaKnown RBP5.8□□□□□ -1.48
CSDE1-202ENST00000339438 LRRC27Q9C0I9 530 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 FBXO28Q9NVF7 368 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 PCDH10Q9P2E7 1040 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 STK17AQ9UEE5 414 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 RSL24D1Q9UHA3 163 aaKnown RBP5.8□□□□□ -1.48
CSDE1-202ENST00000339438 MTO1Q9Y2Z2 717 aaKnown RBP5.8□□□□□ -1.48
CSDE1-202ENST00000339438 RNF11Q9Y3C5 154 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 CCL15-CCL14A0A0B4J2E2 113 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 FOXD2O60548 495 aaPredicted RBP5.8□□□□□ -1.48
CSDE1-202ENST00000339438 CALM1P0DP23 149 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 CALM2P0DP24 149 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 CALM3P0DP25 149 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 ESRRAP11474 423 aaPredicted RBP5.8□□□□□ -1.48
CSDE1-202ENST00000339438 ZNF23P17027 643 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 FXR2P51116 673 aaKnown RBP eCLIP5.8□□□□□ -1.485e-7■□□□□ 10.4
CSDE1-202ENST00000339438 NOP14P78316 857 aaKnown RBP5.8□□□□□ -1.48
CSDE1-202ENST00000339438 AMPD3Q01432 767 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 KLF1Q13351 362 aaPredicted RBP5.8□□□□□ -1.48
CSDE1-202ENST00000339438 E2F2Q14209 437 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 CCL15Q16663 113 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 KCTD21Q4G0X4 260 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 NIPAL1Q6NVV3 410 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 SV2BQ7L1I2 683 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 CCDC110Q8TBZ0 833 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 TBC1D15Q8TC07 691 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 COA7Q96BR5 231 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 C9orf72Q96LT7 481 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 DOK1Q99704 481 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 MKNK1Q9BUB5 465 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 SPATC1LQ9H0A9 340 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 VPS11Q9H270 941 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 BCAS3Q9H6U6 928 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 CLK4Q9HAZ1 481 aaKnown RBP5.8□□□□□ -1.48
CSDE1-202ENST00000339438 MAP3K20Q9NYL2 800 aaKnown RBP5.8□□□□□ -1.48
CSDE1-202ENST00000339438 PRR12Q9ULL5 1215 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 LAMA5O15230 3695 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 A0A0G2JND7 137 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 FAM237BA0A1B0GVD1 139 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 ESYT2A0FGR8 921 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 MIF4GDA9UHW6 222 aaKnown RBP5.8□□□□□ -1.48
CSDE1-202ENST00000339438 THAP12O43422 761 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 XPOTO43592 962 aaKnown RBP5.8□□□□□ -1.48
CSDE1-202ENST00000339438 COMTP21964 271 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 S100A1P23297 94 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 CA8P35219 290 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 KPNA1P52294 538 aaPredicted RBP5.8□□□□□ -1.48
CSDE1-202ENST00000339438 NR1H2P55055 460 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 EDRF1Q3B7T1 1238 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 DCAF15Q66K64 600 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 OGFOD2Q6N063 350 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 KSR1Q8IVT5 923 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 PCYOX1LQ8NBM8 494 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 DCUN1D1Q96GG9 259 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 FBXL18Q96ME1 805 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 NLRP4Q96MN2 994 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 CDH19Q9H159 772 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 RRN3Q9NYV6 651 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 RAB26Q9ULW5 256 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 N6AMT1Q9Y5N5 214 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 CORINQ9Y5Q5 1042 aa5.8□□□□□ -1.48
CSDE1-202ENST00000339438 EMSYQ7Z589 1322 aa5.79□□□□□ -1.48
CSDE1-202ENST00000339438 ANKRD62A6NC57 917 aa5.79□□□□□ -1.48
CSDE1-202ENST00000339438 TRIM64A6NGJ6 449 aa5.79□□□□□ -1.48
CSDE1-202ENST00000339438 AKAP3O75969 853 aa5.79□□□□□ -1.48
CSDE1-202ENST00000339438 ZNF12P17014 697 aa5.79□□□□□ -1.48
CSDE1-202ENST00000339438 CD247P20963 164 aa5.79□□□□□ -1.48
CSDE1-202ENST00000339438 ABCB4P21439 1286 aa5.79□□□□□ -1.48
CSDE1-202ENST00000339438 CALML3P27482 149 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 696.5 ms