RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 HMBSP08397 361 aa16.62■□□□□ 0.25
CCDC28A-201ENST00000332797 NCAM1P13591 858 aa16.62■□□□□ 0.25
CCDC28A-201ENST00000332797 ARSAP15289 507 aa16.62■□□□□ 0.25
CCDC28A-201ENST00000332797 CASP14P31944 242 aa16.62■□□□□ 0.25
CCDC28A-201ENST00000332797 ZBED6P86452 979 aa16.62■□□□□ 0.25
CCDC28A-201ENST00000332797 PDGFRLQ15198 375 aa16.62■□□□□ 0.25
CCDC28A-201ENST00000332797 TAF5Q15542 800 aa16.62■□□□□ 0.25
CCDC28A-201ENST00000332797 MLF2Q15773 248 aaPredicted RBP16.62■□□□□ 0.25
CCDC28A-201ENST00000332797 CLEC16AQ2KHT3 1053 aa16.62■□□□□ 0.25
CCDC28A-201ENST00000332797 C2CD6Q53TS8 623 aa16.62■□□□□ 0.25
CCDC28A-201ENST00000332797 TOGARAM2Q6ZUX3 1019 aa16.62■□□□□ 0.25
CCDC28A-201ENST00000332797 VSTM4Q8IW00 320 aa16.62■□□□□ 0.25
CCDC28A-201ENST00000332797 C18orf8Q96DM3 657 aa16.62■□□□□ 0.25
CCDC28A-201ENST00000332797 NUCKS1Q9H1E3 243 aaKnown RBP16.62■□□□□ 0.25
CCDC28A-201ENST00000332797 MFSD1Q9H3U5 465 aa16.62■□□□□ 0.25
CCDC28A-201ENST00000332797 TRPV5Q9NQA5 729 aa16.62■□□□□ 0.25
CCDC28A-201ENST00000332797 HPS4Q9NQG7 708 aa16.62■□□□□ 0.25
CCDC28A-201ENST00000332797 GTSE1Q9NYZ3 720 aa16.62■□□□□ 0.25
CCDC28A-201ENST00000332797 SFMBT1Q9UHJ3 866 aa16.62■□□□□ 0.25
CCDC28A-201ENST00000332797 LUC7L2Q9Y383 392 aaKnown RBP16.62■□□□□ 0.25
CCDC28A-201ENST00000332797 COL4A3Q01955 1670 aa16.62■□□□□ 0.25
CCDC28A-201ENST00000332797 E2F8A0AVK6 867 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 CAPN9O14815 690 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 GRAP2O75791 330 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 PDGFBP01127 241 aaPredicted RBP16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 SKILP12757 684 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 NSFP46459 744 aaKnown RBP16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 GABRB2P47870 512 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 KPNA1P52294 538 aaPredicted RBP16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 KLHL30Q0D2K2 578 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 TRIM14Q14142 442 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 EML3Q32P44 896 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 EFHC1Q5JVL4 640 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 OLFML1Q6UWY5 402 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 MMS22LQ6ZRQ5 1243 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 TPRG1Q6ZUI0 275 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 SLC30A5Q8TAD4 765 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 ATP2A3Q93084 1043 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 TRIM62Q9BVG3 475 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 C1QTNF1Q9BXJ1 281 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 LINC00597Q9H2U6 94 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 HAUS4Q9H6D7 363 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 POPDC2Q9HBU9 364 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 C11orf16Q9NQ32 467 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 LSM7Q9UK45 103 aaKnown RBP16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 NAALADL1Q9UQQ1 740 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 PIAS3Q9Y6X2 628 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 SLC9A3R1O14745 358 aaPredicted RBP16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 MSI1O43347 362 aaKnown RBP16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 TECTAO75443 2155 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 STC2O76061 302 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 FYNP06241 537 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 UNGP13051 313 aaPredicted RBP16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 TNFAIP3P21580 790 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 PRKCIP41743 596 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 SOX9P48436 509 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 YWHAZP63104 245 aaKnown RBP16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 COG7P83436 770 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 SLC6A3Q01959 620 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 RUNX3Q13761 415 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 ITPRIPL2Q3MIP1 535 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 MSANTD2Q6P1R3 559 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 XYLT1Q86Y38 959 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 ZDHHC17Q8IUH5 632 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 BBS7Q8IWZ6 715 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 C11orf70Q9BRQ4 267 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 SYT11Q9BT88 431 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 ASNSD1Q9NWL6 643 aa16.61■□□□□ 0.25
CCDC28A-201ENST00000332797 GOLGA8SH3BPF8 625 aa16.6■□□□□ 0.25
CCDC28A-201ENST00000332797 STK25O00506 426 aa16.6■□□□□ 0.25
CCDC28A-201ENST00000332797 HSF2BPO75031 334 aa16.6■□□□□ 0.25
CCDC28A-201ENST00000332797 NFATC1O95644 943 aa16.6■□□□□ 0.25
CCDC28A-201ENST00000332797 GLI1P08151 1106 aa16.6■□□□□ 0.25
CCDC28A-201ENST00000332797 TPM1P09493 284 aa16.6■□□□□ 0.25
CCDC28A-201ENST00000332797 MMP8P22894 467 aa16.6■□□□□ 0.25
CCDC28A-201ENST00000332797 CENPCQ03188 943 aa16.6■□□□□ 0.25
CCDC28A-201ENST00000332797 PRKCQQ04759 706 aa16.6■□□□□ 0.25
CCDC28A-201ENST00000332797 TDRD12Q587J7 1177 aaKnown RBP16.6■□□□□ 0.25
CCDC28A-201ENST00000332797 TMEM31Q5JXX7 168 aa16.6■□□□□ 0.25
CCDC28A-201ENST00000332797 FAM102AQ5T9C2 384 aaPredicted RBP16.6■□□□□ 0.25
CCDC28A-201ENST00000332797 SYPL2Q5VXT5 272 aa16.6■□□□□ 0.25
CCDC28A-201ENST00000332797 SLC26A9Q7LBE3 791 aa16.6■□□□□ 0.25
CCDC28A-201ENST00000332797 ZNF571Q7Z3V5 609 aaPredicted RBP16.6■□□□□ 0.25
CCDC28A-201ENST00000332797 CPA6Q8N4T0 437 aa16.6■□□□□ 0.25
CCDC28A-201ENST00000332797 KIAA1958Q8N8K9 716 aa16.6■□□□□ 0.25
CCDC28A-201ENST00000332797 FLCNQ8NFG4 579 aa16.6■□□□□ 0.25
CCDC28A-201ENST00000332797 DQX1Q8TE96 717 aaKnown RBP16.6■□□□□ 0.25
CCDC28A-201ENST00000332797 SYN2Q92777 582 aaPredicted RBP16.6■□□□□ 0.25
CCDC28A-201ENST00000332797 PBXIP1Q96AQ6 731 aa16.6■□□□□ 0.25
CCDC28A-201ENST00000332797 PLD4Q96BZ4 506 aa16.6■□□□□ 0.25
CCDC28A-201ENST00000332797 SHDQ96IW2 340 aa16.6■□□□□ 0.25
CCDC28A-201ENST00000332797 TBC1D17Q9HA65 648 aa16.6■□□□□ 0.25
CCDC28A-201ENST00000332797 TBC1D14Q9P2M4 693 aa16.6■□□□□ 0.25
CCDC28A-201ENST00000332797 GREM1O60565 184 aa16.59■□□□□ 0.25
CCDC28A-201ENST00000332797 GPR37L1O60883 481 aa16.59■□□□□ 0.25
CCDC28A-201ENST00000332797 CORO1AP31146 461 aaKnown RBP16.59■□□□□ 0.25
CCDC28A-201ENST00000332797 DCAF6Q58WW2 860 aa16.59■□□□□ 0.25
CCDC28A-201ENST00000332797 HTR3DQ70Z44 454 aa16.59■□□□□ 0.25
CCDC28A-201ENST00000332797 BEND5Q7L4P6 421 aa16.59■□□□□ 0.25
CCDC28A-201ENST00000332797 TMC6Q7Z403 805 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms