RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 YWHAZP63104 245 aaKnown RBP11.93□□□□□ -0.5
CUX1-202ENST00000292538 AP1B1Q10567 949 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 MPP2Q14168 576 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 TIGD5Q53EQ6 642 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 ARHGAP17Q68EM7 881 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 CLEC20AQ6ZU45 233 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 GPRIN1Q7Z2K8 1008 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 FBF1Q8TES7 1133 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 KCTD15Q96SI1 283 aaPredicted RBP11.93□□□□□ -0.5
CUX1-202ENST00000292538 C12orf65Q9H3J6 166 aaKnown RBP11.93□□□□□ -0.5
CUX1-202ENST00000292538 NUDT5Q9UKK9 219 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 Q9Y3F1 56 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 ARL4AP40617 200 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 ELK3P41970 407 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 SLC10A2Q12908 348 aaPredicted RBP11.93□□□□□ -0.5
CUX1-202ENST00000292538 NOMO1Q15155 1222 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 IGDCC3Q8IVU1 814 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 MICALL1Q8N3F8 863 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 FAM129AQ9BZQ8 928 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 SENP6Q9GZR1 1112 aaPredicted RBP11.93□□□□□ -0.5
CUX1-202ENST00000292538 DNAI2Q9GZS0 605 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 TRPV6Q9H1D0 765 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 NRDE2Q9H7Z3 1164 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 NKIRAS1Q9NYS0 192 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 TLL2Q9Y6L7 1015 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 ANK1P16157 1881 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 A0A1W2PPM1 405 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 YJEFN3A6XGL0 299 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 E7ENQ6 273 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 ITGB1P05556 798 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 SETSIPP0DME0 302 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 ATP5DP30049 168 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 L1CAMP32004 1257 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 PTPN7P35236 360 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 DEUP1Q05D60 604 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 STAT4Q14765 748 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 PDK2Q15119 407 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 CASC4Q6P4E1 433 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 KCNT2Q6UVM3 1135 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 FAM47EQ6ZV65 393 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 PAQR9Q6ZVX9 377 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 SLC26A9Q7LBE3 791 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 TP53INP2Q8IXH6 220 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 TMEM209Q96SK2 561 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 ALG13Q9NP73 1137 aaKnown RBP11.93□□□□□ -0.5
CUX1-202ENST00000292538 TMEM30AQ9NV96 361 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 SLC38A7Q9NVC3 462 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 SNX10Q9Y5X0 201 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 GOLGA6L7A0A1B0GV03 622 aa11.92□□□□□ -0.5
CUX1-202ENST00000292538 OR4Q2P0C623 313 aa11.92□□□□□ -0.5
CUX1-202ENST00000292538 GSCP56915 257 aaPredicted RBP11.92□□□□□ -0.5
CUX1-202ENST00000292538 GPX6P59796 221 aa11.92□□□□□ -0.5
CUX1-202ENST00000292538 MRPS5P82675 430 aaKnown RBP11.92□□□□□ -0.5
CUX1-202ENST00000292538 ITGA7Q13683 1181 aa11.92□□□□□ -0.5
CUX1-202ENST00000292538 EFHC1Q5JVL4 640 aa11.92□□□□□ -0.5
CUX1-202ENST00000292538 GKAP1Q5VSY0 366 aaPredicted RBP11.92□□□□□ -0.5
CUX1-202ENST00000292538 NUGGCQ68CJ6 796 aa11.92□□□□□ -0.5
CUX1-202ENST00000292538 DENND5BQ6ZUT9 1274 aa11.92□□□□□ -0.5
CUX1-202ENST00000292538 PCGF5Q86SE9 256 aa11.92□□□□□ -0.5
CUX1-202ENST00000292538 CROCCP2Q86T23 111 aa11.92□□□□□ -0.5
CUX1-202ENST00000292538 SERINC5Q86VE9 423 aa11.92□□□□□ -0.5
CUX1-202ENST00000292538 SEC16BQ96JE7 1060 aa11.92□□□□□ -0.5
CUX1-202ENST00000292538 CSPG4P5Q96PW8 444 aa11.92□□□□□ -0.5
CUX1-202ENST00000292538 SHOC2Q9UQ13 582 aa11.92□□□□□ -0.5
CUX1-202ENST00000292538 PRG3Q9Y2Y8 225 aaPredicted RBP11.92□□□□□ -0.5
CUX1-202ENST00000292538 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.92□□□□□ -0.5
CUX1-202ENST00000292538 TMEM88BA6NKF7 163 aa11.92□□□□□ -0.5
CUX1-202ENST00000292538 XPO1O14980 1071 aaKnown RBP11.92□□□□□ -0.5
CUX1-202ENST00000292538 STIP1P31948 543 aaKnown RBP11.92□□□□□ -0.5
CUX1-202ENST00000292538 MATKP42679 507 aa11.92□□□□□ -0.5
CUX1-202ENST00000292538 ACADSBP45954 432 aa11.92□□□□□ -0.5
CUX1-202ENST00000292538 VSTM1Q6UX27 236 aa11.92□□□□□ -0.5
CUX1-202ENST00000292538 PPP1R21Q6ZMI0 780 aa11.92□□□□□ -0.5
CUX1-202ENST00000292538 CACNA2D3Q8IZS8 1091 aa11.92□□□□□ -0.5
CUX1-202ENST00000292538 TOP6BLQ8N6T0 577 aa11.92□□□□□ -0.5
CUX1-202ENST00000292538 NAT8LQ8N9F0 302 aa11.92□□□□□ -0.5
CUX1-202ENST00000292538 ETNK1Q9HBU6 452 aa11.92□□□□□ -0.5
CUX1-202ENST00000292538 FGFR1OP2Q9NVK5 253 aa11.92□□□□□ -0.5
CUX1-202ENST00000292538 DDIT4Q9NX09 232 aa11.92□□□□□ -0.5
CUX1-202ENST00000292538 EFR3BQ9Y2G0 817 aa11.92□□□□□ -0.5
CUX1-202ENST00000292538 IKBKGQ9Y6K9 419 aa11.92□□□□□ -0.5
CUX1-202ENST00000292538 H0YHG0 523 aa11.91□□□□□ -0.5
CUX1-202ENST00000292538 ALOX15BO15296 676 aa11.91□□□□□ -0.5
CUX1-202ENST00000292538 GRIA1P42261 906 aa11.91□□□□□ -0.5
CUX1-202ENST00000292538 CRADDP78560 199 aa11.91□□□□□ -0.5
CUX1-202ENST00000292538 SP3Q02447 781 aa11.91□□□□□ -0.5
CUX1-202ENST00000292538 RNASELQ05823 741 aaKnown RBP11.91□□□□□ -0.5
CUX1-202ENST00000292538 SEPT7Q16181 437 aaKnown RBP11.91□□□□□ -0.5
CUX1-202ENST00000292538 CEP57Q86XR8 500 aa11.91□□□□□ -0.5
CUX1-202ENST00000292538 CD99L2Q8TCZ2 262 aa11.91□□□□□ -0.5
CUX1-202ENST00000292538 RAET1EQ8TD07 263 aa11.91□□□□□ -0.5
CUX1-202ENST00000292538 ATXN2LQ8WWM7 1075 aaKnown RBP11.91□□□□□ -0.5
CUX1-202ENST00000292538 HNRNPABQ99729 332 aaKnown RBP11.91□□□□□ -0.5
CUX1-202ENST00000292538 SIK2Q9H0K1 926 aa11.91□□□□□ -0.5
CUX1-202ENST00000292538 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.91□□□□□ -0.54e-7■■■□□ 17.6
CUX1-202ENST00000292538 FARP1Q9Y4F1 1045 aaPredicted RBP11.91□□□□□ -0.5
CUX1-202ENST00000292538 TTLL3Q9Y4R7 772 aa11.91□□□□□ -0.5
CUX1-202ENST00000292538 KBTBD13C9JR72 458 aa11.91□□□□□ -0.5
CUX1-202ENST00000292538 KCNK1O00180 336 aa11.91□□□□□ -0.5
CUX1-202ENST00000292538 SRGAP2BP0DMP2 458 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms