RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 IGFBP6P24592 240 aaPredicted RBP20.84■□□□□ 0.93
VPS53-201ENST00000291074 PTPN9P43378 593 aa20.84■□□□□ 0.93
VPS53-201ENST00000291074 FAAP100Q0VG06 881 aa20.84■□□□□ 0.93
VPS53-201ENST00000291074 UBXN11Q5T124 520 aa20.84■□□□□ 0.93
VPS53-201ENST00000291074 SPRYD7Q5W111 196 aa20.84■□□□□ 0.93
VPS53-201ENST00000291074 RGS9BPQ6ZS82 235 aa20.84■□□□□ 0.93
VPS53-201ENST00000291074 CAND1Q86VP6 1230 aaKnown RBP20.84■□□□□ 0.93
VPS53-201ENST00000291074 PYROXD2Q8N2H3 581 aa20.84■□□□□ 0.93
VPS53-201ENST00000291074 BANPQ8N9N5 519 aa20.84■□□□□ 0.93
VPS53-201ENST00000291074 SERAC1Q96JX3 654 aa20.84■□□□□ 0.93
VPS53-201ENST00000291074 SNX25Q9H3E2 840 aa20.84■□□□□ 0.93
VPS53-201ENST00000291074 ALG13Q9NP73 1137 aaKnown RBP20.84■□□□□ 0.93
VPS53-201ENST00000291074 ZWINTO95229 277 aa20.83■□□□□ 0.93
VPS53-201ENST00000291074 ZDHHC17Q8IUH5 632 aa20.83■□□□□ 0.93
VPS53-201ENST00000291074 NETO2Q8NC67 525 aa20.83■□□□□ 0.93
VPS53-201ENST00000291074 ZNF75CPQ92670 426 aaPredicted RBP20.83■□□□□ 0.93
VPS53-201ENST00000291074 SLC15A5A6NIM6 579 aa20.83■□□□□ 0.92
VPS53-201ENST00000291074 METTL18O95568 372 aa20.83■□□□□ 0.92
VPS53-201ENST00000291074 SNCBQ16143 134 aa20.83■□□□□ 0.92
VPS53-201ENST00000291074 DPYSL2Q16555 572 aa20.83■□□□□ 0.92
VPS53-201ENST00000291074 CCL14Q16627 93 aa20.83■□□□□ 0.92
VPS53-201ENST00000291074 OSTM1Q86WC4 334 aa20.83■□□□□ 0.92
VPS53-201ENST00000291074 CRYBG2Q8N1P7 616 aa20.83■□□□□ 0.92
VPS53-201ENST00000291074 SLC44A1Q8WWI5 657 aa20.83■□□□□ 0.92
VPS53-201ENST00000291074 PLCD4Q9BRC7 762 aa20.83■□□□□ 0.92
VPS53-201ENST00000291074 PLAC1Q9HBJ0 212 aa20.83■□□□□ 0.92
VPS53-201ENST00000291074 SSU72Q9NP77 194 aaKnown RBP20.83■□□□□ 0.92
VPS53-201ENST00000291074 CACNG4Q9UBN1 327 aa20.83■□□□□ 0.92
VPS53-201ENST00000291074 TTLL3Q9Y4R7 772 aa20.83■□□□□ 0.92
VPS53-201ENST00000291074 F5H423 210 aaPredicted RBP20.82■□□□□ 0.92
VPS53-201ENST00000291074 IGF2BP3O00425 579 aaKnown RBP eCLIP20.82■□□□□ 0.92
VPS53-201ENST00000291074 TSHRP16473 764 aa20.82■□□□□ 0.92
VPS53-201ENST00000291074 DESP17661 470 aa20.82■□□□□ 0.92
VPS53-201ENST00000291074 APPL2Q8NEU8 664 aa20.82■□□□□ 0.92
VPS53-201ENST00000291074 CENPIQ92674 756 aaPredicted RBP20.82■□□□□ 0.92
VPS53-201ENST00000291074 KLC2Q9H0B6 622 aa20.82■□□□□ 0.92
VPS53-201ENST00000291074 POPDC2Q9HBU9 364 aa20.82■□□□□ 0.92
VPS53-201ENST00000291074 CFAP69A5D8W1 941 aa20.82■□□□□ 0.92
VPS53-201ENST00000291074 MGRN1O60291 552 aa20.82■□□□□ 0.92
VPS53-201ENST00000291074 CD4P01730 458 aa20.82■□□□□ 0.92
VPS53-201ENST00000291074 MYL3P08590 195 aa20.82■□□□□ 0.92
VPS53-201ENST00000291074 ACAT1P24752 427 aaKnown RBP20.82■□□□□ 0.92
VPS53-201ENST00000291074 PSEN2P49810 448 aa20.82■□□□□ 0.92
VPS53-201ENST00000291074 GTF2A1P52655 376 aaPredicted RBP20.82■□□□□ 0.92
VPS53-201ENST00000291074 SNX16P57768 344 aa20.82■□□□□ 0.92
VPS53-201ENST00000291074 PITX1P78337 314 aaPredicted RBP20.82■□□□□ 0.92
VPS53-201ENST00000291074 ADAM17P78536 824 aa20.82■□□□□ 0.92
VPS53-201ENST00000291074 SEPT7Q16181 437 aaKnown RBP20.82■□□□□ 0.92
VPS53-201ENST00000291074 OTOAQ7RTW8 1153 aa20.82■□□□□ 0.92
VPS53-201ENST00000291074 FAM131BQ86XD5 332 aa20.82■□□□□ 0.92
VPS53-201ENST00000291074 GBP7Q8N8V2 638 aaPredicted RBP20.82■□□□□ 0.92
VPS53-201ENST00000291074 CSPG4P5Q96PW8 444 aa20.82■□□□□ 0.92
VPS53-201ENST00000291074 TMPRSS4Q9NRS4 437 aa20.82■□□□□ 0.92
VPS53-201ENST00000291074 CXorf49A8MYA2 514 aaPredicted RBP20.81■□□□□ 0.92
VPS53-201ENST00000291074 CLDN5O00501 218 aa20.81■□□□□ 0.92
VPS53-201ENST00000291074 C1QAP02745 245 aa20.81■□□□□ 0.92
VPS53-201ENST00000291074 MT-ND3P03897 115 aa20.81■□□□□ 0.92
VPS53-201ENST00000291074 INHBAP08476 426 aa20.81■□□□□ 0.92
VPS53-201ENST00000291074 AMPD1P23109 780 aa20.81■□□□□ 0.92
VPS53-201ENST00000291074 TAF6P49848 677 aa20.81■□□□□ 0.92
VPS53-201ENST00000291074 CDC42EP1Q00587 391 aa20.81■□□□□ 0.92
VPS53-201ENST00000291074 CTAGE3PQ8IX95 158 aa20.81■□□□□ 0.92
VPS53-201ENST00000291074 ADGRF2Q8IZF7 708 aa20.81■□□□□ 0.92
VPS53-201ENST00000291074 ZNF560Q96MR9 790 aa20.81■□□□□ 0.92
VPS53-201ENST00000291074 MYLK2Q9H1R3 596 aa20.81■□□□□ 0.92
VPS53-201ENST00000291074 IPPQ9Y573 584 aa20.81■□□□□ 0.92
VPS53-201ENST00000291074 IKBKGQ9Y6K9 419 aa20.81■□□□□ 0.92
VPS53-201ENST00000291074 GOT1P17174 413 aa20.81■□□□□ 0.92
VPS53-201ENST00000291074 KCNT2Q6UVM3 1135 aa20.81■□□□□ 0.92
VPS53-201ENST00000291074 ZNF276Q8N554 614 aa20.81■□□□□ 0.92
VPS53-201ENST00000291074 PPM1NQ8N819 430 aa20.81■□□□□ 0.92
VPS53-201ENST00000291074 GDAP2Q9NXN4 497 aa20.81■□□□□ 0.92
VPS53-201ENST00000291074 ZC3H7BQ9UGR2 993 aaKnown RBP20.81■□□□□ 0.92
VPS53-201ENST00000291074 CHKBQ9Y259 395 aa20.81■□□□□ 0.92
VPS53-201ENST00000291074 SYNJ2BP-COX16A0A087WUM0 186 aa20.81■□□□□ 0.92
VPS53-201ENST00000291074 DCAF8L1A6NGE4 600 aa20.81■□□□□ 0.92
VPS53-201ENST00000291074 ZNF865P0CJ78 1059 aaPredicted RBP20.81■□□□□ 0.92
VPS53-201ENST00000291074 NQO1P15559 274 aaKnown RBP20.81■□□□□ 0.92
VPS53-201ENST00000291074 ADIGQ0VDE8 80 aa20.81■□□□□ 0.92
VPS53-201ENST00000291074 PIGZQ86VD9 579 aa20.81■□□□□ 0.92
VPS53-201ENST00000291074 CDKL3Q8IVW4 592 aaPredicted RBP20.81■□□□□ 0.92
VPS53-201ENST00000291074 SMG8Q8ND04 991 aaKnown RBP20.81■□□□□ 0.92
VPS53-201ENST00000291074 PTPRN2Q92932 1015 aa20.81■□□□□ 0.92
VPS53-201ENST00000291074 FAM149B1Q96BN6 582 aa20.81■□□□□ 0.92
VPS53-201ENST00000291074 KLHL29Q96CT2 875 aa20.81■□□□□ 0.92
VPS53-201ENST00000291074 COX16Q9P0S2 106 aa20.81■□□□□ 0.92
VPS53-201ENST00000291074 IQANK1A0A1B0GTG1 560 aa20.8■□□□□ 0.92
VPS53-201ENST00000291074 UNCXA6NJT0 531 aa20.8■□□□□ 0.92
VPS53-201ENST00000291074 BEST1O76090 585 aa20.8■□□□□ 0.92
VPS53-201ENST00000291074 PYGBP11216 843 aa20.8■□□□□ 0.92
VPS53-201ENST00000291074 GRIA1P42261 906 aa20.8■□□□□ 0.92
VPS53-201ENST00000291074 RABGGTBP53611 331 aa20.8■□□□□ 0.92
VPS53-201ENST00000291074 SLC45A4Q5BKX6 768 aa20.8■□□□□ 0.92
VPS53-201ENST00000291074 ZNF534Q76KX8 674 aa20.8■□□□□ 0.92
VPS53-201ENST00000291074 DEFB106AQ8N104 65 aa20.8■□□□□ 0.92
VPS53-201ENST00000291074 MPP5Q8N3R9 675 aa20.8■□□□□ 0.92
VPS53-201ENST00000291074 ERP27Q96DN0 273 aa20.8■□□□□ 0.92
VPS53-201ENST00000291074 ZFP42Q96MM3 310 aa20.8■□□□□ 0.92
VPS53-201ENST00000291074 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP20.8■□□□□ 0.92
VPS53-201ENST00000291074 CFAP73A6NFT4 308 aa20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms