RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 SRPK1Q96SB4 655 aaKnown RBP17.26■□□□□ 0.35
VPS54-201ENST00000272322 NCAPGQ9BPX3 1015 aa17.26■□□□□ 0.35
VPS54-201ENST00000272322 UBP1Q9NZI7 540 aa17.26■□□□□ 0.35
VPS54-201ENST00000272322 SLC24A2Q9UI40 661 aa17.26■□□□□ 0.35
VPS54-201ENST00000272322 HTTP42858 3142 aa17.25■□□□□ 0.35
VPS54-201ENST00000272322 CCL15-CCL14A0A0B4J2E2 113 aa17.25■□□□□ 0.35
VPS54-201ENST00000272322 CXCL11O14625 94 aa17.25■□□□□ 0.35
VPS54-201ENST00000272322 TROVE2P10155 538 aaKnown RBP eCLIP17.25■□□□□ 0.35
VPS54-201ENST00000272322 MYL2P10916 166 aa17.25■□□□□ 0.35
VPS54-201ENST00000272322 AFF1P51825 1210 aaKnown RBP17.25■□□□□ 0.35
VPS54-201ENST00000272322 ENPEPQ07075 957 aa17.25■□□□□ 0.35
VPS54-201ENST00000272322 CCL15Q16663 113 aa17.25■□□□□ 0.35
VPS54-201ENST00000272322 NDUFAF2Q8N183 169 aa17.25■□□□□ 0.35
VPS54-201ENST00000272322 PPP1R14CQ8TAE6 165 aa17.25■□□□□ 0.35
VPS54-201ENST00000272322 TBCBQ99426 244 aa17.25■□□□□ 0.35
VPS54-201ENST00000272322 ASB7Q9H672 318 aa17.25■□□□□ 0.35
VPS54-201ENST00000272322 AP4E1Q9UPM8 1137 aa17.25■□□□□ 0.35
VPS54-201ENST00000272322 SNAI1O95863 264 aaPredicted RBP17.25■□□□□ 0.35
VPS54-201ENST00000272322 CSH1P0DML2 217 aa17.25■□□□□ 0.35
VPS54-201ENST00000272322 CSH2P0DML3 217 aa17.25■□□□□ 0.35
VPS54-201ENST00000272322 GNL1P36915 607 aaPredicted RBP17.25■□□□□ 0.35
VPS54-201ENST00000272322 SLC6A3Q01959 620 aa17.25■□□□□ 0.35
VPS54-201ENST00000272322 GRM1Q13255 1194 aa17.25■□□□□ 0.35
VPS54-201ENST00000272322 MARCH8Q5T0T0 291 aa17.25■□□□□ 0.35
VPS54-201ENST00000272322 ANKRD20A3Q5VUR7 823 aa17.25■□□□□ 0.35
VPS54-201ENST00000272322 LCLAT1Q6UWP7 414 aa17.25■□□□□ 0.35
VPS54-201ENST00000272322 OLFML1Q6UWY5 402 aa17.25■□□□□ 0.35
VPS54-201ENST00000272322 RIBC1Q8N443 379 aaPredicted RBP17.25■□□□□ 0.35
VPS54-201ENST00000272322 A0A1B0GUA9 196 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 WDR27A2RRH5 827 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 BEST1O76090 585 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 CTSHP09668 335 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 T-ENOLP0DO92 83 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 HOXA11P31270 313 aaPredicted RBP17.24■□□□□ 0.35
VPS54-201ENST00000272322 ARFIP2P53365 341 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 KDSRQ06136 332 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 MOGSQ13724 837 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 BANPQ8N9N5 519 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 PPP1R36Q96LQ0 422 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 RILPQ96NA2 401 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 FOXP3Q9BZS1 431 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 GBA2Q9HCG7 927 aaPredicted RBP17.24■□□□□ 0.35
VPS54-201ENST00000272322 ARL8BQ9NVJ2 186 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 LCTP09848 1927 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 IQANK1A0A1B0GTG1 560 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 I3L4J1 428 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 CYP2C9P11712 490 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 STIP1P31948 543 aaKnown RBP17.24■□□□□ 0.35
VPS54-201ENST00000272322 EPHX2P34913 555 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 ADIGQ0VDE8 80 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 ZNF484Q5JVG2 852 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 CEP128Q6ZU80 1094 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 CAND1Q86VP6 1230 aaKnown RBP17.24■□□□□ 0.35
VPS54-201ENST00000272322 RELL1Q8IUW5 271 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 GBP7Q8N8V2 638 aaPredicted RBP17.24■□□□□ 0.35
VPS54-201ENST00000272322 C10orf82Q8WW14 230 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 KHSRPQ92945 711 aaKnown RBP eCLIP17.24■□□□□ 0.354e-7■■□□□ 13.6
VPS54-201ENST00000272322 MED10Q9BTT4 135 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 KLC2Q9H0B6 622 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 NRDE2Q9H7Z3 1164 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 CPA4Q9UI42 421 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 STARD13Q9Y3M8 1113 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 SNX10Q9Y5X0 201 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 CFAP73A6NFT4 308 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 PRPF4O43172 522 aaKnown RBP eCLIP17.24■□□□□ 0.35
VPS54-201ENST00000272322 FASTKD5Q7L8L6 764 aaKnown RBP17.24■□□□□ 0.35
VPS54-201ENST00000272322 KDELC2Q7Z4H8 507 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 APBB1IPQ7Z5R6 666 aaPredicted RBP17.24■□□□□ 0.35
VPS54-201ENST00000272322 FNIP1Q8TF40 1166 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 TMEM120AQ9BXJ8 343 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 UNKQ9C0B0 810 aaKnown RBP17.24■□□□□ 0.35
VPS54-201ENST00000272322 SNX25Q9H3E2 840 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 MROH8Q9H579 483 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 ACTL7BQ9Y614 415 aa17.24■□□□□ 0.35
VPS54-201ENST00000272322 BTBD19C9JJ37 291 aa17.23■□□□□ 0.35
VPS54-201ENST00000272322 CHI3L2Q15782 390 aa17.23■□□□□ 0.35
VPS54-201ENST00000272322 PREPLQ4J6C6 727 aaPredicted RBP17.23■□□□□ 0.35
VPS54-201ENST00000272322 DEFB106AQ8N104 65 aa17.23■□□□□ 0.35
VPS54-201ENST00000272322 VPS52Q8N1B4 723 aa17.23■□□□□ 0.35
VPS54-201ENST00000272322 TRIM55Q9BYV6 548 aa17.23■□□□□ 0.35
VPS54-201ENST00000272322 ARHGEF3Q9NR81 526 aa17.23■□□□□ 0.35
VPS54-201ENST00000272322 TEX264Q9Y6I9 313 aa17.23■□□□□ 0.35
VPS54-201ENST00000272322 GM2AP17900 193 aa17.23■□□□□ 0.35
VPS54-201ENST00000272322 SLC8A1P32418 973 aa17.23■□□□□ 0.35
VPS54-201ENST00000272322 SOX4Q06945 474 aaPredicted RBP17.23■□□□□ 0.35
VPS54-201ENST00000272322 SNAPC2Q13487 334 aa17.23■□□□□ 0.35
VPS54-201ENST00000272322 SWT1Q5T5J6 900 aaKnown RBP17.23■□□□□ 0.35
VPS54-201ENST00000272322 RNF43Q68DV7 783 aa17.23■□□□□ 0.35
VPS54-201ENST00000272322 HEATR6Q6AI08 1181 aaKnown RBP17.23■□□□□ 0.35
VPS54-201ENST00000272322 UNC5AQ6ZN44 842 aa17.23■□□□□ 0.35
VPS54-201ENST00000272322 HASPINQ8TF76 798 aa17.23■□□□□ 0.35
VPS54-201ENST00000272322 KANSL3Q9P2N6 904 aa17.23■□□□□ 0.35
VPS54-201ENST00000272322 MGAMO43451 1857 aa17.23■□□□□ 0.35
VPS54-201ENST00000272322 MAGEB2O15479 319 aa17.23■□□□□ 0.35
VPS54-201ENST00000272322 KCNA4P22459 653 aa17.23■□□□□ 0.35
VPS54-201ENST00000272322 MLH1P40692 756 aa17.23■□□□□ 0.35
VPS54-201ENST00000272322 SERPINB4P48594 390 aa17.23■□□□□ 0.35
VPS54-201ENST00000272322 SLC26A2P50443 739 aa17.23■□□□□ 0.35
VPS54-201ENST00000272322 NUDCD1Q96RS6 583 aa17.23■□□□□ 0.35
VPS54-201ENST00000272322 PPARGC1AQ9UBK2 798 aaKnown RBP17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms