RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 DPEP2Q9H4A9 486 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 TBX20Q9UMR3 447 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 CCDC195A0A1B0GUA6 201 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 ZSCAN5CA6NGD5 496 aaPredicted RBP5.2□□□□□ -1.58
SCN1A-218ENST00000640036 LRRC53A6NM62 1247 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 WEE2P0C1S8 567 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 CCNYL3P0C7X3 344 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 GPR1P46091 355 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 ILF3Q12906 894 aaKnown RBP eCLIP5.2□□□□□ -1.58
SCN1A-218ENST00000640036 PDGFRLQ15198 375 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 DOK6Q6PKX4 331 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 MTHFD1LQ6UB35 978 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 MOXD1Q6UVY6 613 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 SLC36A4Q6YBV0 504 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 MCEMP1Q8IX19 187 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 IFT20Q8IY31 132 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 DTX3LQ8TDB6 740 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 TRAPPC12Q8WVT3 735 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 LENG9Q96B70 501 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 POLR3CQ9BUI4 534 aaPredicted RBP5.2□□□□□ -1.58
SCN1A-218ENST00000640036 ADAM28Q9UKQ2 775 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 ALG6Q9Y672 507 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 KPNA7A9QM74 516 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 NEDD8-MDP1E9PL57 170 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 INPPL1O15357 1258 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 CFLARO15519 480 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 ACSL4O60488 711 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 SMIM24O75264 130 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 KRT33AO76009 404 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 TAS2R50P59544 299 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 SKOR1P84550 965 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 PDK1Q15118 436 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 TRAPPC5Q8IUR0 188 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 VPS37AQ8NEZ2 397 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 RERGQ96A58 199 aaPredicted RBP5.2□□□□□ -1.58
SCN1A-218ENST00000640036 SIPA1Q96FS4 1042 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 MYOCQ99972 504 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 CAPN10Q9HC96 672 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 ZNHIT2Q9UHR6 403 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 TPX2Q9ULW0 747 aaKnown RBP5.2□□□□□ -1.58
SCN1A-218ENST00000640036 DYRK1BQ9Y463 629 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 CICQ96RK0 1608 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-218ENST00000640036 VIPP01282 170 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 CA3P07451 260 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 SLC8A1P32418 973 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 CXCL12P48061 93 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 KDSRQ06136 332 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 CYTH1Q15438 398 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 ALG11Q2TAA5 492 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 EMC10Q5UCC4 262 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 CYB5R4Q7L1T6 521 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 TRIM58Q8NG06 486 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 PSMA8Q8TAA3 256 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 TUBB6Q9BUF5 446 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 GABRQQ9UN88 632 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 ATRXP46100 2492 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 INTS1Q8N201 2190 aaKnown RBP5.19□□□□□ -1.58
SCN1A-218ENST00000640036 URADA6NGE7 173 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 HNRNPRO43390 633 aaKnown RBP5.19□□□□□ -1.58
SCN1A-218ENST00000640036 MZF1P28698 734 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-218ENST00000640036 HMOX2P30519 316 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 HOXC12P31275 282 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 P3H1Q32P28 736 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 ANO7Q6IWH7 933 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 VSIG10LQ86VR7 867 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 CALML6Q8TD86 181 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 KRT35Q92764 455 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 NKD2Q969F2 451 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-218ENST00000640036 TMEM159Q96B96 161 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 BBS4Q96RK4 519 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 YDJCA8MPS7 323 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 SYN3O14994 580 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 VDRP11473 427 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 E2F4Q16254 413 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 CCL14Q16627 93 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 NAA35Q5VZE5 725 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 TPRG1Q6ZUI0 275 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 GAS2L3Q86XJ1 694 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 RASGRP3Q8IV61 690 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 LGI2Q8N0V4 545 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 KCNB2Q92953 911 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 CHORDC1Q9UHD1 332 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-218ENST00000640036 PARP4Q9UKK3 1724 aaKnown RBP5.19□□□□□ -1.58
SCN1A-218ENST00000640036 TEX28O15482 410 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 TIMM44O43615 452 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 ANXA9O76027 345 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 HLA-DRAP01903 254 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 CSTF1Q05048 431 aaKnown RBP5.19□□□□□ -1.58
SCN1A-218ENST00000640036 FOXM1Q08050 763 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 TBC1D1Q86TI0 1168 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-218ENST00000640036 SGMS1Q86VZ5 419 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 PHYKPLQ8IUZ5 450 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 MTBPQ96DY7 904 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 OSBPL9Q96SU4 736 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 LGMNQ99538 433 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 CLPBQ9H078 707 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 XAB2Q9HCS7 855 aaKnown RBP5.19□□□□□ -1.58
SCN1A-218ENST00000640036 CLIC5Q9NZA1 410 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 HCN3Q9P1Z3 774 aa5.19□□□□□ -1.58
SCN1A-218ENST00000640036 KIAA1522Q9P206 1035 aaPredicted RBP5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms