RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 FAM84BQ96KN1 310 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-217ENST00000637988 ZNHIT2Q9UHR6 403 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 USP20Q9Y2K6 914 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 RAD54BQ9Y620 910 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 NMT2O60551 498 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 PMPCBO75439 489 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 GRAP2O75791 330 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 CCNDBP1O95273 360 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 CAPN1P07384 714 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 SP100P23497 879 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-217ENST00000637988 HPCAL1P37235 193 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 PTPN12Q05209 780 aaKnown RBP6.32□□□□□ -1.4
SCN1A-217ENST00000637988 DOK6Q6PKX4 331 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 ZNF410Q86VK4 478 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 GPR135Q8IZ08 494 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 ZNF333Q96JL9 665 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 CORO1BQ9BR76 489 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 TLR7Q9NYK1 1049 aaKnown RBP6.32□□□□□ -1.4
SCN1A-217ENST00000637988 APEX2Q9UBZ4 518 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 ITGA11Q9UKX5 1188 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 E9PBE3 544 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 H3BRB1 525 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 CYP21A2P08686 494 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 FGRP09769 529 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 IL1R1P14778 569 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 ACO1P21399 889 aaKnown RBP6.32□□□□□ -1.4
SCN1A-217ENST00000637988 CAP2P40123 477 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 RPIAP49247 311 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 CTCFP49711 727 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-217ENST00000637988 PEX5P50542 639 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 SNRPD1P62314 119 aaKnown RBP6.32□□□□□ -1.4
SCN1A-217ENST00000637988 PPATQ06203 517 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 TTC39BQ5VTQ0 682 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-217ENST00000637988 PEG10Q86TG7 708 aaKnown RBP6.32□□□□□ -1.4
SCN1A-217ENST00000637988 C7orf61Q8IZ16 206 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 SLAIN1Q8ND83 568 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 APBB2Q92870 758 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 AGPAT1Q99943 283 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 MRPS26Q9BYN8 205 aaKnown RBP6.32□□□□□ -1.4
SCN1A-217ENST00000637988 SLITRK2Q9H156 845 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 TUT1Q9H6E5 874 aaKnown RBP6.32□□□□□ -1.4
SCN1A-217ENST00000637988 INTS10Q9NVR2 710 aaKnown RBP6.32□□□□□ -1.4
SCN1A-217ENST00000637988 TRIM10Q9UDY6 481 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 CNTNAP2Q9UHC6 1331 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 SMIM31A0A1B0GVY4 71 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 PLA2G6O60733 806 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 HLA-DQA2P01906 255 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 MMEP08473 750 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 OR1E1P30953 314 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 PTPN7P35236 360 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 DDX39BQ13838 428 aaKnown RBP6.32□□□□□ -1.4
SCN1A-217ENST00000637988 PGS1Q32NB8 556 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 PAGE2BQ5JRK9 111 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 CCDC137Q6PK04 289 aaKnown RBP6.32□□□□□ -1.4
SCN1A-217ENST00000637988 PRPF39Q86UA1 669 aaKnown RBP6.32□□□□□ -1.4
SCN1A-217ENST00000637988 ZNF589Q86UQ0 364 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-217ENST00000637988 GUF1Q8N442 669 aaKnown RBP6.32□□□□□ -1.4
SCN1A-217ENST00000637988 AGR3Q8TD06 166 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 PANX3Q96QZ0 392 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 ELOVL4Q9GZR5 314 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 SPTLC3Q9NUV7 552 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 NEDD4P46934 1319 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 GRID2IPA4D2P6 1211 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 TMEM114B3SHH9 223 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 H3BNH8 94 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 TBX4P57082 545 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 GIT2Q14161 759 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 STAT4Q14765 748 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 GLRA4Q5JXX5 417 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 SLC44A2Q8IWA5 706 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-217ENST00000637988 TNS4Q8IZW8 715 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 RBBP8NLQ8NC74 664 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-217ENST00000637988 STARD8Q92502 1023 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 ATG4CQ96DT6 458 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 CPB2Q96IY4 423 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 TBC1D13Q9NVG8 400 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 ADAM30Q9UKF2 790 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 TRPC5OSA6NMA1 111 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 SERPINA4P29622 427 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 UBE3AQ05086 875 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 BCL2L1Q07817 233 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 FAM133BQ5BKY9 247 aaKnown RBP6.31□□□□□ -1.4
SCN1A-217ENST00000637988 RGMBQ6NW40 437 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 MPZL3Q6UWV2 235 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 BTN2A1Q7KYR7 527 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 MARK2Q7KZI7 788 aaKnown RBP6.31□□□□□ -1.4
SCN1A-217ENST00000637988 MYCBPAPQ8TBZ2 947 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 UBE2E3Q969T4 207 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 MARK1Q9P0L2 795 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 PRKAG3Q9UGI9 489 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 GMEB2Q9UKD1 530 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 PDS5AQ29RF7 1337 aaKnown RBP6.31□□□□□ -1.4
SCN1A-217ENST00000637988 RNF103O00237 685 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 UMPSP11172 480 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 PSEN2P49810 448 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 HERVK_113P62684 666 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 RPS6P62753 249 aaKnown RBP6.31□□□□□ -1.4
SCN1A-217ENST00000637988 MDH1BQ5I0G3 518 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 FAXCQ5TGI0 409 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 C12orf60Q5U649 245 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms