RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 DPH6Q7L8W6 267 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 FAM35AQ86V20 835 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 SYT12Q8IV01 421 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 WDR49Q8IV35 697 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 SLC41A1Q8IVJ1 513 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 CHCHD4Q8N4Q1 142 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 ZNF513Q8N8E2 541 aaPredicted RBP9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 B3GALNT2Q8NCR0 500 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 HNRNPLLQ8WVV9 542 aaKnown RBP9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 DHX58Q96C10 678 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 P2RY11Q96G91 374 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 SPACA7Q96KW9 195 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 PCDH15Q96QU1 1955 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 CGRRF1Q99675 332 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 MED10Q9BTT4 135 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 NUSAP1Q9BXS6 441 aaKnown RBP9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 BLZF1Q9H2G9 400 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 POLMQ9NP87 494 aaPredicted RBP9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 AGPAT3Q9NRZ7 376 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 HMGXB4Q9UGU5 601 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 PILRBQ9UKJ0 227 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 NUDT5Q9UKK9 219 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 CYP8B1Q9UNU6 501 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 PLXND1Q9Y4D7 1925 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 A0A1W2PQF6 199 aa9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 WASH3PC4AMC7 463 aa9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 TNFRSF10BO14763 440 aa9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 KRT38O76015 456 aa9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 ADH1CP00326 375 aa9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 MAOBP27338 520 aa9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 SLC5A3P53794 718 aa9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 TNNC1P63316 161 aa9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 ASIC1P78348 528 aa9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 ALCAMQ13740 583 aa9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 MAPRE1Q15691 268 aaKnown RBP9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 E2F4Q16254 413 aa9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 EOGTQ5NDL2 527 aa9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 GPRIN1Q7Z2K8 1008 aa9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 PIP4P1Q86T03 277 aa9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 ACOT1Q86TX2 421 aa9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 CACUL1Q86Y37 369 aa9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 MARCH9Q86YJ5 346 aa9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 ETFBKMTQ8IXQ9 262 aa9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 CCDC65Q8IXS2 484 aa9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 GRAMD1CQ8IYS0 662 aa9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 NUP93Q8N1F7 819 aa9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 PNPLA1Q8N8W4 532 aa9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 SPRYD3Q8NCJ5 442 aa9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 SCFD1Q8WVM8 642 aa9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 SLITRK1Q96PX8 696 aa9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 ELOVL4Q9GZR5 314 aa9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 XYLT2Q9H1B5 865 aa9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 KRT82Q9NSB4 513 aa9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 FAM49BQ9NUQ9 324 aa9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 TFIP11Q9UBB9 837 aaKnown RBP9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 EVLQ9UI08 416 aaPredicted RBP9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 MTMR6Q9Y217 621 aa9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 SH3BP1Q9Y3L3 701 aa9.17□□□□□ -0.94
SHKBP1-220ENST00000599716 KNL1Q8NG31 2342 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 IGHV1OR15-9A0A0B4J2B8 117 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 PRRT4C9JH25 899 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 NEDD8-MDP1E9PL57 170 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 H0Y626 953 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 SLC9A3R1O14745 358 aaPredicted RBP9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 TACC1O75410 805 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 AP1G2O75843 785 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 TRIM16O95361 564 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 HOXB2P14652 356 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 NDUFV2P19404 249 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 PDE6CP51160 858 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 ATXN3P54252 364 aaPredicted RBP9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 GAD2Q05329 585 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 ZNF33AQ06730 810 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 LMAN2Q12907 356 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 SEMA3BQ13214 749 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 BIRC3Q13489 604 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 TRPC3Q13507 836 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 CUL4AQ13619 759 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 PSMD6Q15008 389 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 SLC39A14Q15043 492 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 STK38Q15208 465 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 FAM26FQ5R3K3 315 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 HECTD3Q5T447 861 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 SPOPLQ6IQ16 392 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 SLC23A3Q6PIS1 610 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 EPM2AIP1Q7L775 607 aaPredicted RBP9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 C11orf74Q86VG3 221 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 FUKQ8N0W3 1084 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 ZNF843Q8N446 348 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 MINDY1Q8N5J2 469 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 C12orf29Q8N999 325 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 TERB1Q8NA31 727 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 LSM14AQ8ND56 463 aaKnown RBP9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 ZMIZ2Q8NF64 920 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 HSPA12BQ96MM6 686 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 SMOQ99835 787 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 SLC39A2Q9NP94 309 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 SPHK2Q9NRA0 654 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 DNAJC17Q9NVM6 304 aaKnown RBP9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 OSER1Q9NX31 292 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms