RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 RABEPKQ7Z6M1 372 aa14.37□□□□□ -0.11
TRIM28-211ENST00000597968 C12orf40Q86WS4 652 aa14.37□□□□□ -0.11
TRIM28-211ENST00000597968 BBS7Q8IWZ6 715 aa14.37□□□□□ -0.11
TRIM28-211ENST00000597968 CCDC33Q8N5R6 958 aa14.37□□□□□ -0.11
TRIM28-211ENST00000597968 CYFIP2Q96F07 1278 aa14.37□□□□□ -0.11
TRIM28-211ENST00000597968 KLF16Q9BXK1 252 aaPredicted RBP14.37□□□□□ -0.11
TRIM28-211ENST00000597968 UBXN6Q9BZV1 441 aa14.37□□□□□ -0.11
TRIM28-211ENST00000597968 NIF3L1Q9GZT8 377 aa14.37□□□□□ -0.11
TRIM28-211ENST00000597968 TMEM8AQ9HCN3 771 aa14.37□□□□□ -0.11
TRIM28-211ENST00000597968 RXFP3Q9NSD7 469 aa14.37□□□□□ -0.11
TRIM28-211ENST00000597968 POLR3BQ9NW08 1133 aaPredicted RBP14.37□□□□□ -0.11
TRIM28-211ENST00000597968 CLIC5Q9NZA1 410 aa14.37□□□□□ -0.11
TRIM28-211ENST00000597968 EML5Q05BV3 1969 aa14.36□□□□□ -0.11
TRIM28-211ENST00000597968 MYO16Q9Y6X6 1858 aa14.36□□□□□ -0.11
TRIM28-211ENST00000597968 LNP1A1A4G5 178 aa14.36□□□□□ -0.11
TRIM28-211ENST00000597968 SGK1O00141 431 aa14.36□□□□□ -0.11
TRIM28-211ENST00000597968 GFRA2O00451 464 aa14.36□□□□□ -0.11
TRIM28-211ENST00000597968 DCLK1O15075 740 aa14.36□□□□□ -0.11
TRIM28-211ENST00000597968 NPC1O15118 1278 aa14.36□□□□□ -0.11
TRIM28-211ENST00000597968 CACNG3O60359 315 aa14.36□□□□□ -0.11
TRIM28-211ENST00000597968 GREM1O60565 184 aa14.36□□□□□ -0.11
TRIM28-211ENST00000597968 CILPO75339 1184 aa14.36□□□□□ -0.11
TRIM28-211ENST00000597968 ZNF217O75362 1048 aa14.36□□□□□ -0.11
TRIM28-211ENST00000597968 KCNK5O95279 499 aa14.36□□□□□ -0.11
TRIM28-211ENST00000597968 CCDC130P13994 396 aa14.36□□□□□ -0.11
TRIM28-211ENST00000597968 CSRP1P21291 193 aaKnown RBP14.36□□□□□ -0.11
TRIM28-211ENST00000597968 NTSR1P30989 418 aa14.36□□□□□ -0.11
TRIM28-211ENST00000597968 DPYDQ12882 1025 aa14.36□□□□□ -0.11
TRIM28-211ENST00000597968 CCDC6Q16204 474 aa14.36□□□□□ -0.11
TRIM28-211ENST00000597968 C1orf220Q5T0J3 134 aa14.36□□□□□ -0.11
TRIM28-211ENST00000597968 PEAR1Q5VY43 1037 aaPredicted RBP14.36□□□□□ -0.11
TRIM28-211ENST00000597968 KRT39Q6A163 491 aa14.36□□□□□ -0.11
TRIM28-211ENST00000597968 SDE2Q6IQ49 451 aa14.36□□□□□ -0.11
TRIM28-211ENST00000597968 CCDC186Q7Z3E2 898 aa14.36□□□□□ -0.11
TRIM28-211ENST00000597968 SYT12Q8IV01 421 aa14.36□□□□□ -0.11
TRIM28-211ENST00000597968 ZNF513Q8N8E2 541 aaPredicted RBP14.36□□□□□ -0.11
TRIM28-211ENST00000597968 C12orf29Q8N999 325 aa14.36□□□□□ -0.11
TRIM28-211ENST00000597968 GTPBP4Q9BZE4 634 aaKnown RBP14.36□□□□□ -0.11
TRIM28-211ENST00000597968 TPSD1Q9BZJ3 242 aa14.36□□□□□ -0.11
TRIM28-211ENST00000597968 TMEM9BQ9NQ34 198 aa14.36□□□□□ -0.11
TRIM28-211ENST00000597968 DNMT3LQ9UJW3 386 aa14.36□□□□□ -0.11
TRIM28-211ENST00000597968 USP3Q9Y6I4 520 aa14.36□□□□□ -0.11
TRIM28-211ENST00000597968 HHLA1C9JL84 531 aa14.35□□□□□ -0.11
TRIM28-211ENST00000597968 AP5Z1O43299 807 aa14.35□□□□□ -0.11
TRIM28-211ENST00000597968 ADAM23O75077 832 aa14.35□□□□□ -0.11
TRIM28-211ENST00000597968 BEST1O76090 585 aa14.35□□□□□ -0.11
TRIM28-211ENST00000597968 CEACAM1P13688 526 aa14.35□□□□□ -0.11
TRIM28-211ENST00000597968 CHKAP35790 457 aa14.35□□□□□ -0.11
TRIM28-211ENST00000597968 KIF11P52732 1056 aa14.35□□□□□ -0.11
TRIM28-211ENST00000597968 COG7P83436 770 aa14.35□□□□□ -0.11
TRIM28-211ENST00000597968 ADAM9Q13443 819 aa14.35□□□□□ -0.11
TRIM28-211ENST00000597968 ANO4Q32M45 955 aa14.35□□□□□ -0.11
TRIM28-211ENST00000597968 GRAMD4Q6IC98 578 aa14.35□□□□□ -0.11
TRIM28-211ENST00000597968 KRBA2Q6ZNG9 492 aa14.35□□□□□ -0.11
TRIM28-211ENST00000597968 TMEM25Q86YD3 366 aa14.35□□□□□ -0.11
TRIM28-211ENST00000597968 FAM186BQ8IYM0 893 aa14.35□□□□□ -0.11
TRIM28-211ENST00000597968 ARHGAP18Q8N392 663 aa14.35□□□□□ -0.11
TRIM28-211ENST00000597968 CEP76Q8TAP6 659 aa14.35□□□□□ -0.11
TRIM28-211ENST00000597968 NUSAP1Q9BXS6 441 aaKnown RBP14.35□□□□□ -0.11
TRIM28-211ENST00000597968 DUSP16Q9BY84 665 aa14.35□□□□□ -0.11
TRIM28-211ENST00000597968 DCLK3Q9C098 648 aa14.35□□□□□ -0.11
TRIM28-211ENST00000597968 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.35□□□□□ -0.11
TRIM28-211ENST00000597968 BCCIPQ9P287 314 aaKnown RBP eCLIP14.35□□□□□ -0.11
TRIM28-211ENST00000597968 MAP3K13O43283 966 aa14.34□□□□□ -0.11
TRIM28-211ENST00000597968 RALAP11233 206 aa14.34□□□□□ -0.11
TRIM28-211ENST00000597968 ACO1P21399 889 aaKnown RBP14.34□□□□□ -0.11
TRIM28-211ENST00000597968 DHPSP49366 369 aaPredicted RBP14.34□□□□□ -0.11
TRIM28-211ENST00000597968 NDUFA8P51970 172 aa14.34□□□□□ -0.11
TRIM28-211ENST00000597968 SLC8A3P57103 927 aa14.34□□□□□ -0.11
TRIM28-211ENST00000597968 KDSRQ06136 332 aa14.34□□□□□ -0.11
TRIM28-211ENST00000597968 MAP7D1Q3KQU3 841 aa14.34□□□□□ -0.11
TRIM28-211ENST00000597968 ZCWPW2Q504Y3 356 aa14.34□□□□□ -0.11
TRIM28-211ENST00000597968 COBLL1Q53SF7 1204 aa14.34□□□□□ -0.11
TRIM28-211ENST00000597968 C10orf76Q5T2E6 689 aa14.34□□□□□ -0.11
TRIM28-211ENST00000597968 N4BP2L1Q5TBK1 243 aaPredicted RBP14.34□□□□□ -0.11
TRIM28-211ENST00000597968 SPOPLQ6IQ16 392 aa14.34□□□□□ -0.11
TRIM28-211ENST00000597968 SLC23A3Q6PIS1 610 aa14.34□□□□□ -0.11
TRIM28-211ENST00000597968 TAS1R2Q8TE23 839 aa14.34□□□□□ -0.11
TRIM28-211ENST00000597968 GABRG3Q99928 467 aa14.34□□□□□ -0.11
TRIM28-211ENST00000597968 BBS2Q9BXC9 721 aa14.34□□□□□ -0.11
TRIM28-211ENST00000597968 FAM49BQ9NUQ9 324 aa14.34□□□□□ -0.11
TRIM28-211ENST00000597968 RMND1Q9NWS8 449 aa14.34□□□□□ -0.11
TRIM28-211ENST00000597968 HMGXB4Q9UGU5 601 aa14.34□□□□□ -0.11
TRIM28-211ENST00000597968 FBXO10Q9UK96 956 aa14.34□□□□□ -0.11
TRIM28-211ENST00000597968 TCRBV21S2A2A0A5A6 115 aa14.33□□□□□ -0.12
TRIM28-211ENST00000597968 C4orf47A7E2U8 309 aa14.33□□□□□ -0.12
TRIM28-211ENST00000597968 UPK3BL1B0FP48 263 aa14.33□□□□□ -0.12
TRIM28-211ENST00000597968 UPK3BL2E5RIL1 263 aa14.33□□□□□ -0.12
TRIM28-211ENST00000597968 RARGP13631 454 aa14.33□□□□□ -0.12
TRIM28-211ENST00000597968 HOXB2P14652 356 aa14.33□□□□□ -0.12
TRIM28-211ENST00000597968 TYRP14679 529 aa14.33□□□□□ -0.12
TRIM28-211ENST00000597968 HNRNPLP14866 589 aaKnown RBP eCLIP14.33□□□□□ -0.12
TRIM28-211ENST00000597968 BCKDHBP21953 392 aa14.33□□□□□ -0.12
TRIM28-211ENST00000597968 ADORA2BP29275 332 aa14.33□□□□□ -0.12
TRIM28-211ENST00000597968 GCLMP48507 274 aa14.33□□□□□ -0.12
TRIM28-211ENST00000597968 PPP3CAQ08209 521 aa14.33□□□□□ -0.12
TRIM28-211ENST00000597968 MESP2Q0VG99 397 aa14.33□□□□□ -0.12
TRIM28-211ENST00000597968 EMC10Q5UCC4 262 aa14.33□□□□□ -0.12
TRIM28-211ENST00000597968 LYSMD4Q5XG99 296 aa14.33□□□□□ -0.12
TRIM28-211ENST00000597968 TCEAL6Q6IPX3 200 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms