RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 PRR5-ARHGAP8B1AHC4 643 aa15.85■□□□□ 0.13
UPF1-204ENST00000596842 ZNF189O75820 626 aaPredicted RBP15.85■□□□□ 0.13
UPF1-204ENST00000596842 NCF2P19878 526 aaPredicted RBP15.85■□□□□ 0.13
UPF1-204ENST00000596842 OSBPP22059 807 aa15.85■□□□□ 0.13
UPF1-204ENST00000596842 UBA1P22314 1058 aaKnown RBP15.85■□□□□ 0.13
UPF1-204ENST00000596842 SESN2P58004 480 aaPredicted RBP15.85■□□□□ 0.13
UPF1-204ENST00000596842 ARHGAP8P85298 464 aa15.85■□□□□ 0.13
UPF1-204ENST00000596842 IZUMO2Q6UXV1 221 aa15.85■□□□□ 0.13
UPF1-204ENST00000596842 RGS9BPQ6ZS82 235 aa15.85■□□□□ 0.13
UPF1-204ENST00000596842 SLC26A11Q86WA9 606 aa15.85■□□□□ 0.13
UPF1-204ENST00000596842 RPF1Q9H9Y2 349 aaKnown RBP15.85■□□□□ 0.13
UPF1-204ENST00000596842 LRRC37AA6NMS7 1700 aa15.84■□□□□ 0.13
UPF1-204ENST00000596842 C3orf70A6NLC5 250 aaPredicted RBP15.84■□□□□ 0.13
UPF1-204ENST00000596842 SPECC1L-ADORA2AF8WAN1 911 aa15.84■□□□□ 0.13
UPF1-204ENST00000596842 ZMPSTE24O75844 475 aa15.84■□□□□ 0.13
UPF1-204ENST00000596842 PDE5AO76074 875 aa15.84■□□□□ 0.13
UPF1-204ENST00000596842 MICAL2O94851 1124 aa15.84■□□□□ 0.13
UPF1-204ENST00000596842 LMNAP02545 664 aaKnown RBP15.84■□□□□ 0.13
UPF1-204ENST00000596842 SNRPAP09012 282 aaKnown RBP15.84■□□□□ 0.13
UPF1-204ENST00000596842 CLDN10P78369 228 aa15.84■□□□□ 0.13
UPF1-204ENST00000596842 SLC25A3Q00325 362 aa15.84■□□□□ 0.13
UPF1-204ENST00000596842 AMHR2Q16671 573 aa15.84■□□□□ 0.13
UPF1-204ENST00000596842 CES3Q6UWW8 571 aa15.84■□□□□ 0.13
UPF1-204ENST00000596842 RTKN2Q8IZC4 609 aa15.84■□□□□ 0.13
UPF1-204ENST00000596842 PYDC1Q8WXC3 89 aa15.84■□□□□ 0.13
UPF1-204ENST00000596842 ZNF333Q96JL9 665 aa15.84■□□□□ 0.13
UPF1-204ENST00000596842 CYLDQ9NQC7 956 aa15.84■□□□□ 0.13
UPF1-204ENST00000596842 ARL2P36404 184 aa15.84■□□□□ 0.13
UPF1-204ENST00000596842 ASPAP45381 313 aa15.84■□□□□ 0.13
UPF1-204ENST00000596842 TAP1Q03518 808 aa15.84■□□□□ 0.13
UPF1-204ENST00000596842 XYLT1Q86Y38 959 aa15.84■□□□□ 0.13
UPF1-204ENST00000596842 ARHGAP24Q8N264 748 aa15.84■□□□□ 0.13
UPF1-204ENST00000596842 MPP5Q8N3R9 675 aa15.84■□□□□ 0.13
UPF1-204ENST00000596842 SLC44A1Q8WWI5 657 aa15.84■□□□□ 0.13
UPF1-204ENST00000596842 PGLYRP2Q96PD5 576 aa15.84■□□□□ 0.13
UPF1-204ENST00000596842 ASNSD1Q9NWL6 643 aa15.84■□□□□ 0.13
UPF1-204ENST00000596842 QSER1Q2KHR3 1735 aa15.84■□□□□ 0.13
UPF1-204ENST00000596842 CENPFP49454 3210 aa15.84■□□□□ 0.13
UPF1-204ENST00000596842 SPATA31C2B4DYI2 1134 aa15.84■□□□□ 0.13
UPF1-204ENST00000596842 MED7O43513 233 aa15.84■□□□□ 0.13
UPF1-204ENST00000596842 ONECUT3O60422 494 aaPredicted RBP15.84■□□□□ 0.13
UPF1-204ENST00000596842 ATP6V1G1O75348 118 aa15.84■□□□□ 0.13
UPF1-204ENST00000596842 ABCD1P33897 745 aa15.84■□□□□ 0.13
UPF1-204ENST00000596842 ATXN3P54252 364 aaPredicted RBP15.84■□□□□ 0.13
UPF1-204ENST00000596842 PRKD1Q15139 912 aaPredicted RBP15.84■□□□□ 0.13
UPF1-204ENST00000596842 TTC39BQ5VTQ0 682 aaPredicted RBP15.84■□□□□ 0.13
UPF1-204ENST00000596842 OLFML2BQ68BL8 750 aa15.84■□□□□ 0.13
UPF1-204ENST00000596842 SCUBE3Q8IX30 993 aa15.84■□□□□ 0.13
UPF1-204ENST00000596842 MICALL2Q8IY33 904 aa15.84■□□□□ 0.13
UPF1-204ENST00000596842 MIPOL1Q8TD10 442 aa15.84■□□□□ 0.13
UPF1-204ENST00000596842 SLC26A7Q8TE54 656 aa15.84■□□□□ 0.13
UPF1-204ENST00000596842 RBBP6Q7Z6E9 1792 aaKnown RBP15.83■□□□□ 0.13
UPF1-204ENST00000596842 DCAF8L1A6NGE4 600 aa15.83■□□□□ 0.13
UPF1-204ENST00000596842 SP100P23497 879 aaPredicted RBP15.83■□□□□ 0.13
UPF1-204ENST00000596842 ZNF132P52740 706 aa15.83■□□□□ 0.13
UPF1-204ENST00000596842 CACNA2D1P54289 1103 aa15.83■□□□□ 0.13
UPF1-204ENST00000596842 RTP1P59025 263 aa15.83■□□□□ 0.13
UPF1-204ENST00000596842 PTPN11Q06124 597 aaPredicted RBP15.83■□□□□ 0.13
UPF1-204ENST00000596842 LGSNQ5TDP6 509 aa15.83■□□□□ 0.13
UPF1-204ENST00000596842 ATF7IP2Q5U623 682 aa15.83■□□□□ 0.13
UPF1-204ENST00000596842 MTBPQ96DY7 904 aa15.83■□□□□ 0.13
UPF1-204ENST00000596842 CPB2Q96IY4 423 aa15.83■□□□□ 0.13
UPF1-204ENST00000596842 DHX35Q9H5Z1 703 aaKnown RBP15.83■□□□□ 0.13
UPF1-204ENST00000596842 TRUB2O95900 331 aaKnown RBP15.83■□□□□ 0.12
UPF1-204ENST00000596842 PGK2P07205 417 aa15.83■□□□□ 0.12
UPF1-204ENST00000596842 ABCG1P45844 678 aa15.83■□□□□ 0.12
UPF1-204ENST00000596842 ATXN1P54253 815 aaKnown RBP15.83■□□□□ 0.12
UPF1-204ENST00000596842 EN1Q05925 392 aaPredicted RBP15.83■□□□□ 0.12
UPF1-204ENST00000596842 GRIK3Q13003 919 aa15.83■□□□□ 0.12
UPF1-204ENST00000596842 RIPOR1Q6ZS17 1223 aa15.83■□□□□ 0.12
UPF1-204ENST00000596842 SCUBE1Q8IWY4 988 aa15.83■□□□□ 0.12
UPF1-204ENST00000596842 PPP1R13LQ8WUF5 828 aa15.83■□□□□ 0.12
UPF1-204ENST00000596842 PTCD3Q96EY7 689 aaKnown RBP15.83■□□□□ 0.12
UPF1-204ENST00000596842 FAM210AQ96ND0 272 aa15.83■□□□□ 0.12
UPF1-204ENST00000596842 SDCBP2Q9H190 292 aa15.83■□□□□ 0.12
UPF1-204ENST00000596842 RSAD1Q9HA92 442 aa15.83■□□□□ 0.12
UPF1-204ENST00000596842 CCDC78A2IDD5 438 aa15.83■□□□□ 0.12
UPF1-204ENST00000596842 CSH1P0DML2 217 aa15.83■□□□□ 0.12
UPF1-204ENST00000596842 CSH2P0DML3 217 aa15.83■□□□□ 0.12
UPF1-204ENST00000596842 SAT1P21673 171 aa15.83■□□□□ 0.12
UPF1-204ENST00000596842 SERPINB6P35237 376 aa15.83■□□□□ 0.12
UPF1-204ENST00000596842 RAB27AP51159 221 aa15.83■□□□□ 0.12
UPF1-204ENST00000596842 HACE1Q8IYU2 909 aa15.83■□□□□ 0.12
UPF1-204ENST00000596842 ZNF276Q8N554 614 aa15.83■□□□□ 0.12
UPF1-204ENST00000596842 GSTCDQ8NEC7 633 aa15.83■□□□□ 0.12
UPF1-204ENST00000596842 EPAS1Q99814 870 aa15.83■□□□□ 0.12
UPF1-204ENST00000596842 KLC2Q9H0B6 622 aa15.83■□□□□ 0.12
UPF1-204ENST00000596842 MAP3K20Q9NYL2 800 aaKnown RBP15.83■□□□□ 0.12
UPF1-204ENST00000596842 YWHAZP63104 245 aaKnown RBP15.82■□□□□ 0.12
UPF1-204ENST00000596842 PDE1BQ01064 536 aa15.82■□□□□ 0.12
UPF1-204ENST00000596842 CDCA2Q69YH5 1023 aaPredicted RBP15.82■□□□□ 0.12
UPF1-204ENST00000596842 PPP1R2P3Q6NXS1 205 aa15.82■□□□□ 0.12
UPF1-204ENST00000596842 ACO2Q99798 780 aaKnown RBP15.82■□□□□ 0.12
UPF1-204ENST00000596842 B3GNT5Q9BYG0 378 aa15.82■□□□□ 0.12
UPF1-204ENST00000596842 MSCO60682 206 aa15.82■□□□□ 0.12
UPF1-204ENST00000596842 OPHN1O60890 802 aa15.82■□□□□ 0.12
UPF1-204ENST00000596842 PHKA2P46019 1235 aa15.82■□□□□ 0.12
UPF1-204ENST00000596842 CA9Q16790 459 aa15.82■□□□□ 0.12
UPF1-204ENST00000596842 HSDL1Q3SXM5 330 aa15.82■□□□□ 0.12
UPF1-204ENST00000596842 PPP1R15BQ5SWA1 713 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms