RNA–Protein interactions for RNA: ENST00000587988.5

SMARCA4-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 552 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-213ENST00000587988 MSANTD4Q8NCY6 345 aa11.22□□□□□ -0.61
SMARCA4-213ENST00000587988 FAM149B1Q96BN6 582 aa11.22□□□□□ -0.61
SMARCA4-213ENST00000587988 PDLIM2Q96JY6 352 aa11.22□□□□□ -0.61
SMARCA4-213ENST00000587988 RPGRIP1Q96KN7 1286 aa11.22□□□□□ -0.61
SMARCA4-213ENST00000587988 CCDC42Q96M95 316 aa11.22□□□□□ -0.61
SMARCA4-213ENST00000587988 BAG1Q99933 345 aaPredicted RBP11.22□□□□□ -0.61
SMARCA4-213ENST00000587988 SMG9Q9H0W8 520 aaKnown RBP11.22□□□□□ -0.61
SMARCA4-213ENST00000587988 SLITRK6Q9H5Y7 841 aa11.22□□□□□ -0.61
SMARCA4-213ENST00000587988 CLIC5Q9NZA1 410 aa11.22□□□□□ -0.61
SMARCA4-213ENST00000587988 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.22□□□□□ -0.61
SMARCA4-213ENST00000587988 NAALADL1Q9UQQ1 740 aa11.22□□□□□ -0.61
SMARCA4-213ENST00000587988 TCF20Q9UGU0 1960 aaKnown RBP11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 OLFM2O95897 454 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 CALB1P05937 261 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 RALAP11233 206 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 LAMP2P13473 410 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 BMP1P13497 986 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 HDCP19113 662 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 ABCB4P21439 1286 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 RRM1P23921 792 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 PSEN1P49768 467 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 TUBP50607 506 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 GSCP56915 257 aaPredicted RBP11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 RNASE9P60153 205 aaKnown RBP11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 ZXDBP98169 803 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 AAK1Q2M2I8 961 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 FAM78AQ5JUQ0 283 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 EFHC1Q5JVL4 640 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 FAM102AQ5T9C2 384 aaPredicted RBP11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 SYPL2Q5VXT5 272 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 TRNP1Q6NT89 227 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 TOGARAM2Q6ZUX3 1019 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 SLC26A9Q7LBE3 791 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 OTOP3Q7RTS5 596 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 ZDHHC17Q8IUH5 632 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 TMTC1Q8IUR5 882 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 ARID3BQ8IVW6 561 aaPredicted RBP11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 CMTM8Q8IZV2 173 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 DEFB106AQ8N104 65 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 ZNF276Q8N554 614 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 ZSCAN18Q8TBC5 510 aaPredicted RBP11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 ATXN2LQ8WWM7 1075 aaKnown RBP11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 VCPIP1Q96JH7 1222 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 ASB16Q96NS5 453 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 ASB2Q96Q27 587 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 PACSIN1Q9BY11 444 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 METTL5Q9NRN9 209 aaKnown RBP11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 ABCC13Q9NSE7 274 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 ASNSD1Q9NWL6 643 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 GDE1Q9NZC3 331 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 SFMBT1Q9UHJ3 866 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 TMEM59LQ9UK28 342 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 FAM50BQ9Y247 325 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 CCL26Q9Y258 94 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 USTQ9Y2C2 406 aa11.21□□□□□ -0.61
SMARCA4-213ENST00000587988 C5orf42Q9H799 3197 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 TRAV19A0A0A6YYK7 116 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 SOBPA7XYQ1 873 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 SART1O43290 800 aaKnown RBP11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 PRAMEF12O95522 483 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 GLI1P08151 1106 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 MBL2P11226 248 aaPredicted RBP11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 NCAM1P13591 858 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 FCARP24071 287 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 ATP5C1P36542 298 aaKnown RBP11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 FLT3P36888 993 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 SCNN1AP37088 669 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 VIPR2P41587 438 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 GALCP54803 685 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 YWHAZP63104 245 aaKnown RBP11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 PITX1P78337 314 aaPredicted RBP11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 EFEMP1Q12805 493 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 C10orf120Q5SQS8 335 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 PPP1R15BQ5SWA1 713 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 TANGO2Q6ICL3 276 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 PLEKHA7Q6IQ23 1121 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 PPP1R2P3Q6NXS1 205 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 PARM1Q6UWI2 310 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 LRRC8AQ8IWT6 810 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 CCDC170Q8IYT3 715 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 EMC1Q8N766 993 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 TDRD5Q8NAT2 981 aaKnown RBP11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 C3orf20Q8ND61 904 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 JOSD2Q8TAC2 188 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 RIN3Q8TB24 985 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 ANP32BQ92688 251 aaKnown RBP11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 FGF14Q92915 247 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 USP13Q92995 863 aaPredicted RBP11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 ZNF653Q96CK0 615 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 ARHGEF26Q96DR7 871 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 RSPRY1Q96DX4 576 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 ZFRQ96KR1 1074 aaKnown RBP11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 LRRC3BQ96PB8 259 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 SLC2A13Q96QE2 648 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 RPP25Q9BUL9 199 aaKnown RBP11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 ADAM33Q9BZ11 813 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 PLA2G2FQ9BZM2 168 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 THAP2Q9H0W7 228 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 POPDC2Q9HBU9 364 aa11.2□□□□□ -0.62
SMARCA4-213ENST00000587988 WDR35Q9P2L0 1181 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms