RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 NR1H2P55055 460 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 HADHBP55084 474 aaKnown RBP9.93□□□□□ -0.82
CCDC40-212ENST00000574799 RPS6P62753 249 aaKnown RBP9.93□□□□□ -0.82
CCDC40-212ENST00000574799 MRPS22P82650 360 aaKnown RBP9.93□□□□□ -0.82
CCDC40-212ENST00000574799 PPP3CAQ08209 521 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 ZNF720Q7Z2F6 126 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 HPS6Q86YV9 775 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 RNF148Q8N7C7 305 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 GLIS1Q8NBF1 620 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 LMO3Q8TAP4 145 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 TMEM174Q8WUU8 243 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 DCUN1D1Q96GG9 259 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 KCNK16Q96T55 309 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 MPHOSPH6Q99547 160 aaKnown RBP9.93□□□□□ -0.82
CCDC40-212ENST00000574799 SERPINI1Q99574 410 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 SH2D3AQ9BRG2 576 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 MRPS26Q9BYN8 205 aaKnown RBP9.93□□□□□ -0.82
CCDC40-212ENST00000574799 MAF1Q9H063 256 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 ZNF395Q9H8N7 513 aaPredicted RBP9.93□□□□□ -0.82
CCDC40-212ENST00000574799 RSL24D1Q9UHA3 163 aaKnown RBP9.93□□□□□ -0.82
CCDC40-212ENST00000574799 HBS1LQ9Y450 684 aaKnown RBP9.93□□□□□ -0.82
CCDC40-212ENST00000574799 STK24Q9Y6E0 443 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 NUMBLQ9Y6R0 609 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 MCM3APO60318 1980 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 KLHL2O95198 593 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 CYP1A2P05177 515 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 PSMC3P17980 439 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 FMO1Q01740 532 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 ZBTB17Q13105 803 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 BMPR2Q13873 1038 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 TDRPQ86YL5 185 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 CHURC1Q8WUH1 139 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 PPP1R14BQ96C90 147 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 CBWD1Q9BRT8 395 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 USP29Q9HBJ7 922 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 KANSL3Q9P2N6 904 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 XPO7Q9UIA9 1087 aaKnown RBP9.92□□□□□ -0.82
CCDC40-212ENST00000574799 EIF3DO15371 548 aaKnown RBP eCLIP9.92□□□□□ -0.82
CCDC40-212ENST00000574799 KDM1AO60341 852 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 DLDP09622 509 aaKnown RBP9.92□□□□□ -0.82
CCDC40-212ENST00000574799 TFPTP0C1Z6 253 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 FAM163BP0C2L3 166 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 FLOT2Q14254 428 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 TMEM132BQ14DG7 1078 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 NFIL3Q16649 462 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 NXNQ6DKJ4 435 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 CASC4Q6P4E1 433 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 PCGF5Q86SE9 256 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 CLVS1Q8IUQ0 354 aaPredicted RBP9.92□□□□□ -0.82
CCDC40-212ENST00000574799 NDUFAF2Q8N183 169 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 LRRC43Q8N309 656 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 C17orf50Q8WW18 174 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 SLCO2A1Q92959 643 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 ATG4CQ96DT6 458 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 PPP1R36Q96LQ0 422 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 LXNQ9BS40 222 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 HERPUD2Q9BSE4 406 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 ZNF577Q9BSK1 485 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 PI4K2AQ9BTU6 479 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 RPAP3Q9H6T3 665 aaPredicted RBP9.92□□□□□ -0.82
CCDC40-212ENST00000574799 COPS7BQ9H9Q2 264 aaPredicted RBP9.92□□□□□ -0.82
CCDC40-212ENST00000574799 PLGRKTQ9HBL7 147 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 SPATA7Q9P0W8 599 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 CCPG1Q9ULG6 757 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 ALOX15BO15296 676 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 SEC24DO94855 1032 aaPredicted RBP9.92□□□□□ -0.82
CCDC40-212ENST00000574799 MSX2P35548 267 aaPredicted RBP9.92□□□□□ -0.82
CCDC40-212ENST00000574799 PEX6Q13608 980 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 ALCAMQ13740 583 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 TBCCQ15814 346 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 MYLK3Q32MK0 819 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 C6orf52Q5T4I8 152 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 PAOXQ6QHF9 649 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 CROCCP3Q8IVE0 287 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 NUP93Q8N1F7 819 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 PSPC1Q8WXF1 523 aaKnown RBP9.92□□□□□ -0.82
CCDC40-212ENST00000574799 LPAR1Q92633 364 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 CMTM5Q96DZ9 223 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 KLRG1Q96E93 195 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 TXNDC16Q9P2K2 825 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 DNAJB4Q9UDY4 337 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 ADAMTS6Q9UKP5 1117 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 DNAJC16Q9Y2G8 782 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 ZHX2Q9Y6X8 837 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 ZSWIM8A7E2V4 1837 aa9.92□□□□□ -0.82
CCDC40-212ENST00000574799 CBFA2T3O75081 653 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 DGKIO75912 1065 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 MCF2P10911 925 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 TNNI1P19237 187 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 BACE1P56817 501 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 SP2Q02086 613 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 PDAP1Q13442 181 aaKnown RBP9.91□□□□□ -0.82
CCDC40-212ENST00000574799 PDK1Q15118 436 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 ANGEL2Q5VTE6 544 aaKnown RBP9.91□□□□□ -0.82
CCDC40-212ENST00000574799 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.91□□□□□ -0.82
CCDC40-212ENST00000574799 GAB3Q8WWW8 586 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 CD101Q93033 1021 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 ATP2A3Q93084 1043 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 C12orf42Q96LP6 360 aa9.91□□□□□ -0.82
CCDC40-212ENST00000574799 ACCSQ96QU6 501 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms