RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 LACRTQ9GZZ8 138 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 MUC13Q9H3R2 512 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 ERVK-5Q9HDB9 667 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 SAYSD1Q9NPB0 183 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 NRIP3Q9NQ35 241 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 KRT84Q9NSB2 600 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 TBCCD1Q9NVR7 557 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 GFOD1Q9NXC2 390 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 CRIM1Q9NZV1 1036 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 CLEC1BQ9P126 229 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 CHORDC1Q9UHD1 332 aaPredicted RBP3.25□□□□□ -1.89
VPS35-209ENST00000568642 SH3BGRL2Q9UJC5 107 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 FBXL5Q9UKA1 691 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 ARHGAP26Q9UNA1 814 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 DUSP12Q9UNI6 340 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 PLAGL2Q9UPG8 496 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 TELO2Q9Y4R8 837 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 CCL27Q9Y4X3 112 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 PCDHA13Q9Y5I0 950 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 CLDN16Q9Y5I7 305 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 HS3ST4Q9Y661 456 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 CFAP20Q9Y6A4 193 aaKnown RBP3.25□□□□□ -1.89
VPS35-209ENST00000568642 IKBKGQ9Y6K9 419 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 DMXL1Q9Y485 3027 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 CPSF1Q10570 1443 aaKnown RBP3.25□□□□□ -1.89
VPS35-209ENST00000568642 CFAP46Q8IYW2 2715 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 SSC5DA1L4H1 1573 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 EIF3AQ14152 1382 aaKnown RBP3.25□□□□□ -1.89
VPS35-209ENST00000568642 ABCC11Q96J66 1382 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 SCN7AQ01118 1682 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 LOC100289279A0A1B0GTE1 492 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 RGSL1A5PLK6 1076 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 FAM90A18PA6NE21 464 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 FAM90A16PA6NEW6 464 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 C2orf71A6NGG8 1288 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 ERICH4A6NGS2 130 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 CCDC69A6NI79 296 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 PRSS29PA6NIE9 313 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 FAM90A9PA6NNJ1 464 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 FAM90A5PA8MXJ8 464 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 FAM25EA8MYX2 175 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 FAM47E-STBD1D6RA91 191 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 H0YIN7 160 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 PCDH17O14917 1159 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 MEFVO15553 781 aaPredicted RBP3.24□□□□□ -1.89
VPS35-209ENST00000568642 KLHL41O60662 606 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 SMPD2O60906 423 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 PPP1R11O60927 126 aaPredicted RBP3.24□□□□□ -1.89
VPS35-209ENST00000568642 ADAM11O75078 769 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 ENTPD3O75355 529 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 SEC22BO75396 215 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 USP1O94782 785 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 CSPG5O95196 566 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 WISP1O95388 367 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 GCNT3O95395 438 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 ANXA1P04083 346 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 PRNPP04156 253 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 ANXA2P07355 339 aaKnown RBP3.24□□□□□ -1.89
VPS35-209ENST00000568642 FAM90A15PP0C7V4 464 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 FAM90A14PP0C7W9 464 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 CKBP12277 381 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 ITIH2P19823 946 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 CD40P25942 277 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 CFPP27918 469 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 HOXC8P31273 242 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 ICAM3P32942 547 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 RFC4P35249 363 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 NNMTP40261 264 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 MTHFRP42898 656 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 SLC6A9P48067 706 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 SLC5A3P53794 718 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 LGALS4P56470 323 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 C21orf58P58505 322 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 ACTR2P61160 394 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 DLG4P78352 724 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 UBXN1Q04323 297 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 KHDRBS1Q07666 443 aaKnown RBP eCLIP3.24□□□□□ -1.89
VPS35-209ENST00000568642 COX10Q12887 443 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 EPS8Q12929 822 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 MALLQ13021 153 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 STK4Q13043 487 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 TARDBPQ13148 414 aaKnown RBP eCLIP3.24□□□□□ -1.89
VPS35-209ENST00000568642 TRIM29Q14134 588 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 NFE2L1Q14494 772 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 GPR19Q15760 415 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 GLIPR1L2Q4G1C9 344 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 FAM47CQ5HY64 1035 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 RTP2Q5QGT7 225 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 MPP7Q5T2T1 576 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 GARNL3Q5VVW2 1013 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 FYB2Q5VWT5 728 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 DIEXFQ68CQ4 756 aaKnown RBP3.24□□□□□ -1.89
VPS35-209ENST00000568642 MCTP2Q6DN12 878 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 ISM2Q6H9L7 571 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 FDX2Q6P4F2 183 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 INO80CQ6PI98 192 aaPredicted RBP3.24□□□□□ -1.89
VPS35-209ENST00000568642 MEX3BQ6ZN04 569 aaKnown RBP3.24□□□□□ -1.89
VPS35-209ENST00000568642 ZNF574Q6ZN55 896 aaPredicted RBP3.24□□□□□ -1.89
VPS35-209ENST00000568642 ARHGAP36Q6ZRI8 547 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 PRR23BQ6ZRT6 265 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms