RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 COQ8BQ96D53 544 aa3.48□□□□□ -1.85
VPS35-207ENST00000568191 ZBTB45Q96K62 511 aaPredicted RBP3.48□□□□□ -1.85
VPS35-207ENST00000568191 SIGLEC11Q96RL6 698 aa3.48□□□□□ -1.85
VPS35-207ENST00000568191 C22orf23Q9BZE7 217 aa3.48□□□□□ -1.85
VPS35-207ENST00000568191 ATP6V0A4Q9HBG4 840 aa3.48□□□□□ -1.85
VPS35-207ENST00000568191 USP29Q9HBJ7 922 aa3.48□□□□□ -1.85
VPS35-207ENST00000568191 ASIC5Q9NY37 505 aa3.48□□□□□ -1.85
VPS35-207ENST00000568191 DNAJB11Q9UBS4 358 aa3.48□□□□□ -1.85
VPS35-207ENST00000568191 FAM90A10PA6NDY2 464 aa3.47□□□□□ -1.85
VPS35-207ENST00000568191 TRIM38O00635 465 aa3.47□□□□□ -1.85
VPS35-207ENST00000568191 PARP1P09874 1014 aaKnown RBP3.47□□□□□ -1.85
VPS35-207ENST00000568191 TXNP10599 105 aaKnown RBP3.47□□□□□ -1.85
VPS35-207ENST00000568191 APEHP13798 732 aaKnown RBP3.47□□□□□ -1.85
VPS35-207ENST00000568191 HGFP14210 728 aa3.47□□□□□ -1.85
VPS35-207ENST00000568191 FAM193AP78312 1265 aa3.47□□□□□ -1.85
VPS35-207ENST00000568191 FMO1Q01740 532 aa3.47□□□□□ -1.85
VPS35-207ENST00000568191 STIM1Q13586 685 aa3.47□□□□□ -1.85
VPS35-207ENST00000568191 CLCA4Q14CN2 919 aa3.47□□□□□ -1.85
VPS35-207ENST00000568191 MFSD13AQ14CX5 517 aa3.47□□□□□ -1.85
VPS35-207ENST00000568191 NPY5RQ15761 445 aa3.47□□□□□ -1.85
VPS35-207ENST00000568191 KIAA0753Q2KHM9 967 aa3.47□□□□□ -1.85
VPS35-207ENST00000568191 TMTC4Q5T4D3 741 aa3.47□□□□□ -1.85
VPS35-207ENST00000568191 NXNQ6DKJ4 435 aa3.47□□□□□ -1.85
VPS35-207ENST00000568191 APOA5Q6Q788 366 aa3.47□□□□□ -1.85
VPS35-207ENST00000568191 ZNF517Q6ZMY9 492 aaPredicted RBP3.47□□□□□ -1.85
VPS35-207ENST00000568191 DEF8Q6ZN54 512 aa3.47□□□□□ -1.85
VPS35-207ENST00000568191 TECPR1Q7Z6L1 1165 aa3.47□□□□□ -1.85
VPS35-207ENST00000568191 UBE2Q1Q7Z7E8 422 aa3.47□□□□□ -1.85
VPS35-207ENST00000568191 MPLKIPQ8TAP9 179 aa3.47□□□□□ -1.85
VPS35-207ENST00000568191 MAP4K1Q92918 833 aa3.47□□□□□ -1.85
VPS35-207ENST00000568191 APIPQ96GX9 242 aa3.47□□□□□ -1.85
VPS35-207ENST00000568191 TRMOQ9BU70 441 aa3.47□□□□□ -1.85
VPS35-207ENST00000568191 ADGRE3Q9BY15 652 aa3.47□□□□□ -1.85
VPS35-207ENST00000568191 FOXP1Q9H334 677 aaPredicted RBP3.47□□□□□ -1.85
VPS35-207ENST00000568191 EBF3Q9H4W6 596 aa3.47□□□□□ -1.85
VPS35-207ENST00000568191 ARL8BQ9NVJ2 186 aa3.47□□□□□ -1.85
VPS35-207ENST00000568191 MTMR4Q9NYA4 1195 aa3.47□□□□□ -1.85
VPS35-207ENST00000568191 LPAR3Q9UBY5 353 aa3.47□□□□□ -1.85
VPS35-207ENST00000568191 RGS17Q9UGC6 210 aaPredicted RBP3.47□□□□□ -1.85
VPS35-207ENST00000568191 ZMYM2Q9UBW7 1377 aa3.47□□□□□ -1.85
VPS35-207ENST00000568191 LOC105378220A0A1B0GUY1 285 aaPredicted RBP3.46□□□□□ -1.86
VPS35-207ENST00000568191 TTC34A8MYJ7 566 aa3.46□□□□□ -1.86
VPS35-207ENST00000568191 FOXN3O00409 490 aaPredicted RBP3.46□□□□□ -1.86
VPS35-207ENST00000568191 SPRY2O43597 315 aa3.46□□□□□ -1.86
VPS35-207ENST00000568191 TULP3O75386 442 aa3.46□□□□□ -1.86
VPS35-207ENST00000568191 OAZ2O95190 189 aa3.46□□□□□ -1.86
VPS35-207ENST00000568191 SLC3A2P08195 630 aaKnown RBP3.46□□□□□ -1.86
VPS35-207ENST00000568191 TMEM225BP0DP42 221 aa3.46□□□□□ -1.86
VPS35-207ENST00000568191 MYF5P13349 255 aa3.46□□□□□ -1.86
VPS35-207ENST00000568191 RBL1P28749 1068 aa3.46□□□□□ -1.86
VPS35-207ENST00000568191 CPA2P48052 419 aa3.46□□□□□ -1.86
VPS35-207ENST00000568191 CARSP49589 748 aaKnown RBP3.46□□□□□ -1.86
VPS35-207ENST00000568191 DGKQP52824 942 aa3.46□□□□□ -1.86
VPS35-207ENST00000568191 EIF4A1P60842 406 aaKnown RBP3.46□□□□□ -1.86
VPS35-207ENST00000568191 RPS16P62249 146 aaKnown RBP3.46□□□□□ -1.86
VPS35-207ENST00000568191 CCDC15Q0P6D6 951 aa3.46□□□□□ -1.86
VPS35-207ENST00000568191 RAPGEF1Q13905 1077 aa3.46□□□□□ -1.86
VPS35-207ENST00000568191 C3orf38Q5JPI3 329 aa3.46□□□□□ -1.86
VPS35-207ENST00000568191 LVRNQ6Q4G3 990 aa3.46□□□□□ -1.86
VPS35-207ENST00000568191 CLEC9AQ6UXN8 241 aa3.46□□□□□ -1.86
VPS35-207ENST00000568191 RNF44Q7L0R7 432 aa3.46□□□□□ -1.86
VPS35-207ENST00000568191 KCTD20Q7Z5Y7 419 aa3.46□□□□□ -1.86
VPS35-207ENST00000568191 P3H2Q8IVL5 708 aa3.46□□□□□ -1.86
VPS35-207ENST00000568191 TCEAL8Q8IYN2 117 aa3.46□□□□□ -1.86
VPS35-207ENST00000568191 FSTL5Q8N475 847 aaPredicted RBP3.46□□□□□ -1.86
VPS35-207ENST00000568191 LINC01465Q8N7H1 131 aa3.46□□□□□ -1.86
VPS35-207ENST00000568191 MAGEB6Q8N7X4 407 aa3.46□□□□□ -1.86
VPS35-207ENST00000568191 C11orf44Q8N8P7 122 aa3.46□□□□□ -1.86
VPS35-207ENST00000568191 GADD45GIP1Q8TAE8 222 aaPredicted RBP3.46□□□□□ -1.86
VPS35-207ENST00000568191 PNISRQ8TF01 805 aaKnown RBP3.46□□□□□ -1.86
VPS35-207ENST00000568191 MAML1Q92585 1016 aa3.46□□□□□ -1.86
VPS35-207ENST00000568191 PMM1Q92871 262 aa3.46□□□□□ -1.86
VPS35-207ENST00000568191 CTHRC1Q96CG8 243 aa3.46□□□□□ -1.86
VPS35-207ENST00000568191 ZDHHC12Q96GR4 267 aa3.46□□□□□ -1.86
VPS35-207ENST00000568191 STRBPQ96SI9 672 aaKnown RBP3.46□□□□□ -1.86
VPS35-207ENST00000568191 ZNF212Q9UDV6 495 aa3.46□□□□□ -1.86
VPS35-207ENST00000568191 MID2Q9UJV3 735 aa3.46□□□□□ -1.86
VPS35-207ENST00000568191 HS3ST3B1Q9Y662 390 aa3.46□□□□□ -1.86
VPS35-207ENST00000568191 H3BNX3 289 aa3.45□□□□□ -1.86
VPS35-207ENST00000568191 TLR2O60603 784 aa3.45□□□□□ -1.86
VPS35-207ENST00000568191 NTN1O95631 604 aa3.45□□□□□ -1.86
VPS35-207ENST00000568191 HRGP04196 525 aa3.45□□□□□ -1.86
VPS35-207ENST00000568191 PRF1P14222 555 aa3.45□□□□□ -1.86
VPS35-207ENST00000568191 BTF3P20290 206 aaKnown RBP3.45□□□□□ -1.86
VPS35-207ENST00000568191 NFE2Q16621 373 aaPredicted RBP3.45□□□□□ -1.86
VPS35-207ENST00000568191 GFOD2Q3B7J2 385 aa3.45□□□□□ -1.86
VPS35-207ENST00000568191 PLAG1Q6DJT9 500 aa3.45□□□□□ -1.86
VPS35-207ENST00000568191 UNC13DQ70J99 1090 aa3.45□□□□□ -1.86
VPS35-207ENST00000568191 ZDHHC17Q8IUH5 632 aa3.45□□□□□ -1.86
VPS35-207ENST00000568191 ARFGAP1Q8N6T3 406 aa3.45□□□□□ -1.86
VPS35-207ENST00000568191 NRACQ8N912 160 aa3.45□□□□□ -1.86
VPS35-207ENST00000568191 BCAS4Q8TDM0 211 aa3.45□□□□□ -1.86
VPS35-207ENST00000568191 NUAK2Q9H093 628 aa3.45□□□□□ -1.86
VPS35-207ENST00000568191 CHST8Q9H2A9 424 aa3.45□□□□□ -1.86
VPS35-207ENST00000568191 STK32BQ9NY57 414 aa3.45□□□□□ -1.86
VPS35-207ENST00000568191 DKK4Q9UBT3 224 aa3.45□□□□□ -1.86
VPS35-207ENST00000568191 THRAP3Q9Y2W1 955 aaKnown RBP3.45□□□□□ -1.86
VPS35-207ENST00000568191 SQORQ9Y6N5 450 aa3.45□□□□□ -1.86
VPS35-207ENST00000568191 SPATA31A1Q5TZJ5 1347 aa3.44□□□□□ -1.86
VPS35-207ENST00000568191 ADAM10O14672 748 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms