RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 RNF40O75150 1001 aa19.66■□□□□ 0.74
CLN3-227ENST00000567495 CNR2P34972 360 aa19.66■□□□□ 0.74
CLN3-227ENST00000567495 OPRD1P41143 372 aa19.66■□□□□ 0.74
CLN3-227ENST00000567495 COG7P83436 770 aa19.66■□□□□ 0.74
CLN3-227ENST00000567495 GAD2Q05329 585 aa19.66■□□□□ 0.74
CLN3-227ENST00000567495 PKDCCQ504Y2 493 aa19.66■□□□□ 0.74
CLN3-227ENST00000567495 BTBD8Q5XKL5 378 aa19.66■□□□□ 0.74
CLN3-227ENST00000567495 BBS7Q8IWZ6 715 aa19.66■□□□□ 0.74
CLN3-227ENST00000567495 RBBP8NLQ8NC74 664 aaPredicted RBP19.66■□□□□ 0.74
CLN3-227ENST00000567495 ACDQ96AP0 544 aa19.66■□□□□ 0.74
CLN3-227ENST00000567495 IPO9Q96P70 1041 aaKnown RBP19.66■□□□□ 0.74
CLN3-227ENST00000567495 MED15Q96RN5 788 aa19.66■□□□□ 0.74
CLN3-227ENST00000567495 EPC1Q9H2F5 836 aa19.66■□□□□ 0.74
CLN3-227ENST00000567495 SLC8A2Q9UPR5 921 aa19.66■□□□□ 0.74
CLN3-227ENST00000567495 CNTN6Q9UQ52 1028 aa19.66■□□□□ 0.74
CLN3-227ENST00000567495 EP300Q09472 2414 aaPredicted RBP19.65■□□□□ 0.74
CLN3-227ENST00000567495 CCDC163A0A0D9SF12 145 aa19.65■□□□□ 0.74
CLN3-227ENST00000567495 K7ESF4 209 aa19.65■□□□□ 0.74
CLN3-227ENST00000567495 SCAMP3O14828 347 aaKnown RBP19.65■□□□□ 0.74
CLN3-227ENST00000567495 HOXC11O43248 304 aaPredicted RBP19.65■□□□□ 0.74
CLN3-227ENST00000567495 ZNF132P52740 706 aa19.65■□□□□ 0.74
CLN3-227ENST00000567495 YWHAGP61981 247 aaKnown RBP eCLIP19.65■□□□□ 0.74
CLN3-227ENST00000567495 GAB4Q2WGN9 574 aa19.65■□□□□ 0.74
CLN3-227ENST00000567495 DPCR1Q3MIW9 517 aa19.65■□□□□ 0.74
CLN3-227ENST00000567495 LY6G5CQ5SRR4 150 aa19.65■□□□□ 0.74
CLN3-227ENST00000567495 GBP6Q6ZN66 633 aa19.65■□□□□ 0.74
CLN3-227ENST00000567495 RSRC2Q7L4I2 434 aaKnown RBP19.65■□□□□ 0.74
CLN3-227ENST00000567495 LONP2Q86WA8 852 aa19.65■□□□□ 0.74
CLN3-227ENST00000567495 IRF2BP1Q8IU81 584 aa19.65■□□□□ 0.74
CLN3-227ENST00000567495 ARHGEF19Q8IW93 802 aa19.65■□□□□ 0.74
CLN3-227ENST00000567495 SIX6OS1Q8N1H7 587 aa19.65■□□□□ 0.74
CLN3-227ENST00000567495 SCML4Q8N228 414 aa19.65■□□□□ 0.74
CLN3-227ENST00000567495 CAMKK1Q8N5S9 505 aa19.65■□□□□ 0.74
CLN3-227ENST00000567495 TFAP2BQ92481 460 aa19.65■□□□□ 0.74
CLN3-227ENST00000567495 KAT5Q92993 513 aa19.65■□□□□ 0.74
CLN3-227ENST00000567495 PNKPQ96T60 521 aa19.65■□□□□ 0.74
CLN3-227ENST00000567495 UBE2TQ9NPD8 197 aaPredicted RBP19.65■□□□□ 0.74
CLN3-227ENST00000567495 STRIP2Q9ULQ0 834 aa19.65■□□□□ 0.74
CLN3-227ENST00000567495 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.65■□□□□ 0.74
CLN3-227ENST00000567495 ZNF510Q9Y2H8 683 aa19.65■□□□□ 0.74
CLN3-227ENST00000567495 VPS13AQ96RL7 3174 aa19.64■□□□□ 0.73
CLN3-227ENST00000567495 IRF1P10914 325 aa19.64■□□□□ 0.73
CLN3-227ENST00000567495 MTIF2P46199 727 aaKnown RBP19.64■□□□□ 0.73
CLN3-227ENST00000567495 MFAP3P55082 362 aa19.64■□□□□ 0.73
CLN3-227ENST00000567495 NAIF1Q69YI7 327 aaPredicted RBP19.64■□□□□ 0.73
CLN3-227ENST00000567495 NUDT18Q6ZVK8 323 aa19.64■□□□□ 0.73
CLN3-227ENST00000567495 SUMF1Q8NBK3 374 aa19.64■□□□□ 0.73
CLN3-227ENST00000567495 UBA3Q8TBC4 463 aa19.64■□□□□ 0.73
CLN3-227ENST00000567495 SLC35F5Q8WV83 523 aa19.64■□□□□ 0.73
CLN3-227ENST00000567495 RUBCNQ92622 972 aa19.64■□□□□ 0.73
CLN3-227ENST00000567495 SECISBP2LQ93073 1101 aaKnown RBP19.64■□□□□ 0.73
CLN3-227ENST00000567495 HSFY1Q96LI6 401 aa19.64■□□□□ 0.73
CLN3-227ENST00000567495 KREMEN1Q96MU8 473 aa19.64■□□□□ 0.73
CLN3-227ENST00000567495 DCLK3Q9C098 648 aa19.64■□□□□ 0.73
CLN3-227ENST00000567495 CNGB3Q9NQW8 809 aa19.64■□□□□ 0.73
CLN3-227ENST00000567495 SPHK2Q9NRA0 654 aa19.64■□□□□ 0.73
CLN3-227ENST00000567495 OLA1Q9NTK5 396 aaKnown RBP19.64■□□□□ 0.73
CLN3-227ENST00000567495 WDR35Q9P2L0 1181 aa19.64■□□□□ 0.73
CLN3-227ENST00000567495 GVINP1Q7Z2Y8 2422 aa19.64■□□□□ 0.73
CLN3-227ENST00000567495 GPR179Q6PRD1 2367 aa19.63■□□□□ 0.73
CLN3-227ENST00000567495 A0A0A0MRY4 1105 aa19.63■□□□□ 0.73
CLN3-227ENST00000567495 RNF225M0QZC1 329 aaPredicted RBP19.63■□□□□ 0.73
CLN3-227ENST00000567495 GREM1O60565 184 aa19.63■□□□□ 0.73
CLN3-227ENST00000567495 APODP05090 189 aa19.63■□□□□ 0.73
CLN3-227ENST00000567495 KRT5P13647 590 aa19.63■□□□□ 0.73
CLN3-227ENST00000567495 GRIA2P42262 883 aa19.63■□□□□ 0.73
CLN3-227ENST00000567495 MEA1Q16626 185 aa19.63■□□□□ 0.73
CLN3-227ENST00000567495 MAN2A1Q16706 1144 aa19.63■□□□□ 0.73
CLN3-227ENST00000567495 EXOC3L4Q17RC7 722 aa19.63■□□□□ 0.73
CLN3-227ENST00000567495 HSF5Q4G112 596 aaPredicted RBP19.63■□□□□ 0.73
CLN3-227ENST00000567495 TRIM65Q6PJ69 517 aa19.63■□□□□ 0.73
CLN3-227ENST00000567495 SYT13Q7L8C5 426 aa19.63■□□□□ 0.73
CLN3-227ENST00000567495 MIB1Q86YT6 1006 aa19.63■□□□□ 0.73
CLN3-227ENST00000567495 ULBP1Q9BZM6 244 aa19.63■□□□□ 0.73
CLN3-227ENST00000567495 MARCH2Q9P0N8 246 aa19.63■□□□□ 0.73
CLN3-227ENST00000567495 RAB23Q9ULC3 237 aa19.63■□□□□ 0.73
CLN3-227ENST00000567495 M0QYV0 167 aa19.62■□□□□ 0.73
CLN3-227ENST00000567495 TULP2O00295 520 aa19.62■□□□□ 0.73
CLN3-227ENST00000567495 MED7O43513 233 aa19.62■□□□□ 0.73
CLN3-227ENST00000567495 KAT7O95251 611 aa19.62■□□□□ 0.73
CLN3-227ENST00000567495 BRD2P25440 801 aaKnown RBP19.62■□□□□ 0.73
CLN3-227ENST00000567495 MRPS21P82921 87 aaKnown RBP19.62■□□□□ 0.73
CLN3-227ENST00000567495 ADIGQ0VDE8 80 aa19.62■□□□□ 0.73
CLN3-227ENST00000567495 WDR5BQ86VZ2 330 aa19.62■□□□□ 0.73
CLN3-227ENST00000567495 ETFBKMTQ8IXQ9 262 aa19.62■□□□□ 0.73
CLN3-227ENST00000567495 RPLP0P6Q8NHW5 317 aa19.62■□□□□ 0.73
CLN3-227ENST00000567495 KCNV2Q8TDN2 545 aa19.62■□□□□ 0.73
CLN3-227ENST00000567495 IRGQQ8WZA9 623 aa19.62■□□□□ 0.73
CLN3-227ENST00000567495 CRACR2AQ9BSW2 395 aa19.62■□□□□ 0.73
CLN3-227ENST00000567495 ARHGEF4Q9NR80 690 aa19.62■□□□□ 0.73
CLN3-227ENST00000567495 MARK1Q9P0L2 795 aa19.62■□□□□ 0.73
CLN3-227ENST00000567495 DEC1Q9P2X7 70 aa19.62■□□□□ 0.73
CLN3-227ENST00000567495 APEX2Q9UBZ4 518 aa19.62■□□□□ 0.73
CLN3-227ENST00000567495 NUDT5Q9UKK9 219 aa19.62■□□□□ 0.73
CLN3-227ENST00000567495 SMG5Q9UPR3 1016 aaKnown RBP19.62■□□□□ 0.73
CLN3-227ENST00000567495 PATJQ8NI35 1801 aa19.62■□□□□ 0.73
CLN3-227ENST00000567495 K7EQS6 105 aa19.61■□□□□ 0.73
CLN3-227ENST00000567495 MDM4O15151 490 aa19.61■□□□□ 0.73
CLN3-227ENST00000567495 STC2O76061 302 aa19.61■□□□□ 0.73
CLN3-227ENST00000567495 FBXO21O94952 628 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms