RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 ZC3H14Q6PJT7 736 aaKnown RBP14.08□□□□□ -0.16
CLK3-216ENST00000564468 TXNDC11Q6PKC3 985 aa14.08□□□□□ -0.16
CLK3-216ENST00000564468 MAMSTRQ6ZN01 415 aa14.08□□□□□ -0.16
CLK3-216ENST00000564468 DGLUCYQ7Z3D6 616 aa14.08□□□□□ -0.16
CLK3-216ENST00000564468 ZNF687Q8N1G0 1237 aa14.08□□□□□ -0.16
CLK3-216ENST00000564468 SIX6OS1Q8N1H7 587 aa14.08□□□□□ -0.16
CLK3-216ENST00000564468 ANKRD20A12PQ8NF67 263 aa14.08□□□□□ -0.16
CLK3-216ENST00000564468 UBA3Q8TBC4 463 aa14.08□□□□□ -0.16
CLK3-216ENST00000564468 KCTD13Q8WZ19 329 aa14.08□□□□□ -0.16
CLK3-216ENST00000564468 LINC00597Q9H2U6 94 aa14.08□□□□□ -0.16
CLK3-216ENST00000564468 SAMSN1Q9NSI8 373 aaKnown RBP14.08□□□□□ -0.16
CLK3-216ENST00000564468 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.08□□□□□ -0.16
CLK3-216ENST00000564468 LSM7Q9UK45 103 aaKnown RBP14.08□□□□□ -0.16
CLK3-216ENST00000564468 FBXO4Q9UKT5 387 aa14.08□□□□□ -0.16
CLK3-216ENST00000564468 DMXL1Q9Y485 3027 aa14.08□□□□□ -0.16
CLK3-216ENST00000564468 MYO18AQ92614 2054 aaKnown RBP14.08□□□□□ -0.16
CLK3-216ENST00000564468 M0QYV0 167 aa14.07□□□□□ -0.16
CLK3-216ENST00000564468 ADH1CP00326 375 aa14.07□□□□□ -0.16
CLK3-216ENST00000564468 DRD1P21728 446 aa14.07□□□□□ -0.16
CLK3-216ENST00000564468 COG7P83436 770 aa14.07□□□□□ -0.16
CLK3-216ENST00000564468 ARHGAP44Q17R89 818 aa14.07□□□□□ -0.16
CLK3-216ENST00000564468 PKDCCQ504Y2 493 aa14.07□□□□□ -0.16
CLK3-216ENST00000564468 HSP90AA4PQ58FG1 418 aa14.07□□□□□ -0.16
CLK3-216ENST00000564468 C10orf120Q5SQS8 335 aa14.07□□□□□ -0.16
CLK3-216ENST00000564468 ADGRG2Q8IZP9 1017 aa14.07□□□□□ -0.16
CLK3-216ENST00000564468 SCML4Q8N228 414 aa14.07□□□□□ -0.16
CLK3-216ENST00000564468 CCDC26Q8TAB7 109 aa14.07□□□□□ -0.16
CLK3-216ENST00000564468 TFAP2BQ92481 460 aa14.07□□□□□ -0.16
CLK3-216ENST00000564468 ZFRQ96KR1 1074 aaKnown RBP14.07□□□□□ -0.16
CLK3-216ENST00000564468 HSFY1Q96LI6 401 aa14.07□□□□□ -0.16
CLK3-216ENST00000564468 P2RY13Q9BPV8 354 aa14.07□□□□□ -0.16
CLK3-216ENST00000564468 HINFPQ9BQA5 517 aa14.07□□□□□ -0.16
CLK3-216ENST00000564468 NAT10Q9H0A0 1025 aaKnown RBP14.07□□□□□ -0.16
CLK3-216ENST00000564468 NMUR1Q9HB89 426 aa14.07□□□□□ -0.16
CLK3-216ENST00000564468 CNGB3Q9NQW8 809 aa14.07□□□□□ -0.16
CLK3-216ENST00000564468 OLA1Q9NTK5 396 aaKnown RBP14.07□□□□□ -0.16
CLK3-216ENST00000564468 STRIP2Q9ULQ0 834 aa14.07□□□□□ -0.16
CLK3-216ENST00000564468 OTOL1A6NHN0 477 aaPredicted RBP14.06□□□□□ -0.16
CLK3-216ENST00000564468 BRD2P25440 801 aaKnown RBP14.06□□□□□ -0.16
CLK3-216ENST00000564468 GNA15P30679 374 aa14.06□□□□□ -0.16
CLK3-216ENST00000564468 USP8P40818 1118 aa14.06□□□□□ -0.16
CLK3-216ENST00000564468 ACADSBP45954 432 aa14.06□□□□□ -0.16
CLK3-216ENST00000564468 CCR3P51677 355 aa14.06□□□□□ -0.16
CLK3-216ENST00000564468 YWHAGP61981 247 aaKnown RBP eCLIP14.06□□□□□ -0.16
CLK3-216ENST00000564468 MYL5Q02045 173 aa14.06□□□□□ -0.16
CLK3-216ENST00000564468 ADIGQ0VDE8 80 aa14.06□□□□□ -0.16
CLK3-216ENST00000564468 PUM1Q14671 1186 aaKnown RBP eCLIP14.06□□□□□ -0.16
CLK3-216ENST00000564468 ZNF528Q3MIS6 628 aa14.06□□□□□ -0.16
CLK3-216ENST00000564468 FBXO43Q4G163 708 aa14.06□□□□□ -0.16
CLK3-216ENST00000564468 PREPLQ4J6C6 727 aaPredicted RBP14.06□□□□□ -0.16
CLK3-216ENST00000564468 TMEM196Q5HYL7 178 aa14.06□□□□□ -0.16
CLK3-216ENST00000564468 MIIPQ5JXC2 388 aa14.06□□□□□ -0.16
CLK3-216ENST00000564468 BTBD8Q5XKL5 378 aa14.06□□□□□ -0.16
CLK3-216ENST00000564468 HTR3DQ70Z44 454 aa14.06□□□□□ -0.16
CLK3-216ENST00000564468 RSRC2Q7L4I2 434 aaKnown RBP14.06□□□□□ -0.16
CLK3-216ENST00000564468 SCD5Q86SK9 330 aa14.06□□□□□ -0.16
CLK3-216ENST00000564468 SPEM1Q8N4L4 309 aa14.06□□□□□ -0.16
CLK3-216ENST00000564468 SLC35F5Q8WV83 523 aa14.06□□□□□ -0.16
CLK3-216ENST00000564468 CD101Q93033 1021 aa14.06□□□□□ -0.16
CLK3-216ENST00000564468 KLF16Q9BXK1 252 aaPredicted RBP14.06□□□□□ -0.16
CLK3-216ENST00000564468 ULBP1Q9BZM6 244 aa14.06□□□□□ -0.16
CLK3-216ENST00000564468 OSER1Q9NX31 292 aa14.06□□□□□ -0.16
CLK3-216ENST00000564468 ZNF510Q9Y2H8 683 aa14.06□□□□□ -0.16
CLK3-216ENST00000564468 DNAH14Q0VDD8 3507 aa14.05□□□□□ -0.16
CLK3-216ENST00000564468 TULP2O00295 520 aa14.05□□□□□ -0.16
CLK3-216ENST00000564468 THAP12O43422 761 aa14.05□□□□□ -0.16
CLK3-216ENST00000564468 ATG13O75143 517 aa14.05□□□□□ -0.16
CLK3-216ENST00000564468 FBXO21O94952 628 aa14.05□□□□□ -0.16
CLK3-216ENST00000564468 LETM1O95202 739 aaPredicted RBP14.05□□□□□ -0.16
CLK3-216ENST00000564468 TBX18O95935 607 aa14.05□□□□□ -0.16
CLK3-216ENST00000564468 IRF1P10914 325 aa14.05□□□□□ -0.16
CLK3-216ENST00000564468 PGFP49763 221 aa14.05□□□□□ -0.16
CLK3-216ENST00000564468 GALK1P51570 392 aa14.05□□□□□ -0.16
CLK3-216ENST00000564468 NRLP54845 237 aa14.05□□□□□ -0.16
CLK3-216ENST00000564468 BPIFB4P59827 614 aa14.05□□□□□ -0.16
CLK3-216ENST00000564468 GAD2Q05329 585 aa14.05□□□□□ -0.16
CLK3-216ENST00000564468 PTK2Q05397 1052 aa14.05□□□□□ -0.16
CLK3-216ENST00000564468 MTAPQ13126 283 aa14.05□□□□□ -0.16
CLK3-216ENST00000564468 CCINQ13939 588 aa14.05□□□□□ -0.16
CLK3-216ENST00000564468 DHCR24Q15392 516 aa14.05□□□□□ -0.16
CLK3-216ENST00000564468 FKBP15Q5T1M5 1219 aa14.05□□□□□ -0.16
CLK3-216ENST00000564468 CDKAL1Q5VV42 579 aa14.05□□□□□ -0.16
CLK3-216ENST00000564468 GJB7Q6PEY0 223 aa14.05□□□□□ -0.16
CLK3-216ENST00000564468 RNF139Q8WU17 664 aa14.05□□□□□ -0.16
CLK3-216ENST00000564468 ZNF606Q8WXB4 792 aa14.05□□□□□ -0.16
CLK3-216ENST00000564468 IRGQQ8WZA9 623 aa14.05□□□□□ -0.16
CLK3-216ENST00000564468 SHC3Q92529 594 aa14.05□□□□□ -0.16
CLK3-216ENST00000564468 GOLGA1Q92805 767 aa14.05□□□□□ -0.16
CLK3-216ENST00000564468 SECISBP2LQ93073 1101 aaKnown RBP14.05□□□□□ -0.16
CLK3-216ENST00000564468 FAM126AQ9BYI3 521 aaPredicted RBP14.05□□□□□ -0.16
CLK3-216ENST00000564468 DCLK3Q9C098 648 aa14.05□□□□□ -0.16
CLK3-216ENST00000564468 ABCC13Q9NSE7 274 aa14.05□□□□□ -0.16
CLK3-216ENST00000564468 TMEM63CQ9P1W3 806 aa14.05□□□□□ -0.16
CLK3-216ENST00000564468 DNAJC12Q9UKB3 198 aa14.05□□□□□ -0.16
CLK3-216ENST00000564468 KIAA1549LQ6ZVL6 1849 aa14.04□□□□□ -0.16
CLK3-216ENST00000564468 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.04□□□□□ -0.16
CLK3-216ENST00000564468 SART1O43290 800 aaKnown RBP14.04□□□□□ -0.16
CLK3-216ENST00000564468 CYP17A1P05093 508 aa14.04□□□□□ -0.16
CLK3-216ENST00000564468 SP9P0CG40 484 aa14.04□□□□□ -0.16
CLK3-216ENST00000564468 ADH5P11766 374 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms