RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 TFIP11Q9UBB9 837 aaKnown RBP17.39■□□□□ 0.37
CLN3-208ENST00000561505 ASPMQ8IZT6 3477 aa17.39■□□□□ 0.37
CLN3-208ENST00000561505 CACNA1EQ15878 2313 aa17.38■□□□□ 0.37
CLN3-208ENST00000561505 PKD1L2Q7Z442 2459 aa17.38■□□□□ 0.37
CLN3-208ENST00000561505 IGHV1OR15-9A0A0B4J2B8 117 aa17.38■□□□□ 0.37
CLN3-208ENST00000561505 HHLA1C9JL84 531 aa17.38■□□□□ 0.37
CLN3-208ENST00000561505 TRIM24O15164 1050 aa17.38■□□□□ 0.37
CLN3-208ENST00000561505 KLRC4O43908 158 aa17.38■□□□□ 0.37
CLN3-208ENST00000561505 RPN1P04843 607 aaKnown RBP17.38■□□□□ 0.37
CLN3-208ENST00000561505 CISD3P0C7P0 127 aa17.38■□□□□ 0.37
CLN3-208ENST00000561505 SPINK2P20155 84 aa17.38■□□□□ 0.37
CLN3-208ENST00000561505 IFRD2Q12894 506 aaPredicted RBP17.38■□□□□ 0.37
CLN3-208ENST00000561505 ZNF699Q32M78 642 aa17.38■□□□□ 0.37
CLN3-208ENST00000561505 RABEPKQ7Z6M1 372 aa17.38■□□□□ 0.37
CLN3-208ENST00000561505 METTL3Q86U44 580 aaKnown RBP17.38■□□□□ 0.37
CLN3-208ENST00000561505 NAT16Q8N8M0 369 aa17.38■□□□□ 0.37
CLN3-208ENST00000561505 ZNF419Q96HQ0 510 aaPredicted RBP17.38■□□□□ 0.37
CLN3-208ENST00000561505 SLC32A1Q9H598 525 aa17.38■□□□□ 0.37
CLN3-208ENST00000561505 SLC39A2Q9NP94 309 aa17.38■□□□□ 0.37
CLN3-208ENST00000561505 CALCOCO1Q9P1Z2 691 aa17.38■□□□□ 0.37
CLN3-208ENST00000561505 BCCIPQ9P287 314 aaKnown RBP eCLIP17.38■□□□□ 0.37
CLN3-208ENST00000561505 MSRB2Q9Y3D2 182 aa17.38■□□□□ 0.37
CLN3-208ENST00000561505 ZFYVE26Q68DK2 2539 aa17.37■□□□□ 0.37
CLN3-208ENST00000561505 A0A1W2PQD8 194 aa17.37■□□□□ 0.37
CLN3-208ENST00000561505 PRRT4C9JH25 899 aa17.37■□□□□ 0.37
CLN3-208ENST00000561505 GFRA2O00451 464 aa17.37■□□□□ 0.37
CLN3-208ENST00000561505 IKBKBO14920 756 aa17.37■□□□□ 0.37
CLN3-208ENST00000561505 POLR2DO15514 142 aaKnown RBP17.37■□□□□ 0.37
CLN3-208ENST00000561505 TLR5O60602 858 aa17.37■□□□□ 0.37
CLN3-208ENST00000561505 EXOC3O60645 756 aa17.37■□□□□ 0.37
CLN3-208ENST00000561505 ZNF217O75362 1048 aa17.37■□□□□ 0.37
CLN3-208ENST00000561505 GJB3O75712 270 aa17.37■□□□□ 0.37
CLN3-208ENST00000561505 AP1G2O75843 785 aa17.37■□□□□ 0.37
CLN3-208ENST00000561505 ASS1P00966 412 aaKnown RBP17.37■□□□□ 0.37
CLN3-208ENST00000561505 HOXB2P14652 356 aa17.37■□□□□ 0.37
CLN3-208ENST00000561505 CASP1P29466 404 aa17.37■□□□□ 0.37
CLN3-208ENST00000561505 ZNF33AQ06730 810 aa17.37■□□□□ 0.37
CLN3-208ENST00000561505 SGSM1Q2NKQ1 1148 aa17.37■□□□□ 0.37
CLN3-208ENST00000561505 UAP1L1Q3KQV9 507 aa17.37■□□□□ 0.37
CLN3-208ENST00000561505 C10orf76Q5T2E6 689 aa17.37■□□□□ 0.37
CLN3-208ENST00000561505 Q6ZNB5 142 aa17.37■□□□□ 0.37
CLN3-208ENST00000561505 ACOT1Q86TX2 421 aa17.37■□□□□ 0.37
CLN3-208ENST00000561505 TTC30AQ86WT1 665 aa17.37■□□□□ 0.37
CLN3-208ENST00000561505 SLC41A1Q8IVJ1 513 aa17.37■□□□□ 0.37
CLN3-208ENST00000561505 TMC2Q8TDI7 906 aa17.37■□□□□ 0.37
CLN3-208ENST00000561505 HNRNPABQ99729 332 aaKnown RBP17.37■□□□□ 0.37
CLN3-208ENST00000561505 KCTD10Q9H3F6 313 aa17.37■□□□□ 0.37
CLN3-208ENST00000561505 PNPLA8Q9NP80 782 aa17.37■□□□□ 0.37
CLN3-208ENST00000561505 DNAAF2Q9NVR5 837 aaKnown RBP17.37■□□□□ 0.37
CLN3-208ENST00000561505 OSER1Q9NX31 292 aa17.37■□□□□ 0.37
CLN3-208ENST00000561505 WDR35Q9P2L0 1181 aa17.37■□□□□ 0.37
CLN3-208ENST00000561505 SCML2Q9UQR0 700 aa17.37■□□□□ 0.37
CLN3-208ENST00000561505 DMXL2Q8TDJ6 3036 aa17.37■□□□□ 0.37
CLN3-208ENST00000561505 PHACTR2O75167 634 aa17.36■□□□□ 0.37
CLN3-208ENST00000561505 TBX18O95935 607 aa17.36■□□□□ 0.37
CLN3-208ENST00000561505 C7P10643 843 aa17.36■□□□□ 0.37
CLN3-208ENST00000561505 CD59P13987 128 aa17.36■□□□□ 0.37
CLN3-208ENST00000561505 INCA1Q0VD86 236 aa17.36■□□□□ 0.37
CLN3-208ENST00000561505 CUL4BQ13620 913 aa17.36■□□□□ 0.37
CLN3-208ENST00000561505 ENPP2Q13822 863 aa17.36■□□□□ 0.37
CLN3-208ENST00000561505 C1orf220Q5T0J3 134 aa17.36■□□□□ 0.37
CLN3-208ENST00000561505 RESP18Q5W5W9 173 aa17.36■□□□□ 0.37
CLN3-208ENST00000561505 EGFLAMQ63HQ2 1017 aa17.36■□□□□ 0.37
CLN3-208ENST00000561505 GRAMD4Q6IC98 578 aa17.36■□□□□ 0.37
CLN3-208ENST00000561505 ARMCX6Q7L4S7 300 aa17.36■□□□□ 0.37
CLN3-208ENST00000561505 IPO4Q8TEX9 1081 aaKnown RBP17.36■□□□□ 0.37
CLN3-208ENST00000561505 ACOX2Q99424 681 aa17.36■□□□□ 0.37
CLN3-208ENST00000561505 BACH2Q9BYV9 841 aa17.36■□□□□ 0.37
CLN3-208ENST00000561505 BLZF1Q9H2G9 400 aa17.36■□□□□ 0.37
CLN3-208ENST00000561505 TLR8Q9NR97 1041 aaKnown RBP17.36■□□□□ 0.37
CLN3-208ENST00000561505 KRT82Q9NSB4 513 aa17.36■□□□□ 0.37
CLN3-208ENST00000561505 SRRM3A6NNA2 597 aaPredicted RBP17.35■□□□□ 0.37
CLN3-208ENST00000561505 H0Y626 953 aa17.35■□□□□ 0.37
CLN3-208ENST00000561505 PDXKO00764 312 aa17.35■□□□□ 0.37
CLN3-208ENST00000561505 ARHGAP33O14559 1287 aa17.35■□□□□ 0.37
CLN3-208ENST00000561505 TRIM16O95361 564 aa17.35■□□□□ 0.37
CLN3-208ENST00000561505 PDIA4P13667 645 aaKnown RBP17.35■□□□□ 0.37
CLN3-208ENST00000561505 CCDC130P13994 396 aa17.35■□□□□ 0.37
CLN3-208ENST00000561505 TYRP14679 529 aa17.35■□□□□ 0.37
CLN3-208ENST00000561505 NDUFV2P19404 249 aa17.35■□□□□ 0.37
CLN3-208ENST00000561505 ATP5C1P36542 298 aaKnown RBP17.35■□□□□ 0.37
CLN3-208ENST00000561505 ASPAP45381 313 aa17.35■□□□□ 0.37
CLN3-208ENST00000561505 NDST1P52848 882 aa17.35■□□□□ 0.37
CLN3-208ENST00000561505 DLG4P78352 724 aa17.35■□□□□ 0.37
CLN3-208ENST00000561505 RPL6Q02878 288 aaKnown RBP17.35■□□□□ 0.37
CLN3-208ENST00000561505 GFPT1Q06210 699 aaPredicted RBP17.35■□□□□ 0.37
CLN3-208ENST00000561505 STK4Q13043 487 aa17.35■□□□□ 0.37
CLN3-208ENST00000561505 SLC14A1Q13336 389 aa17.35■□□□□ 0.37
CLN3-208ENST00000561505 BIRC3Q13489 604 aa17.35■□□□□ 0.37
CLN3-208ENST00000561505 HNRNPDQ14103 355 aaKnown RBP17.35■□□□□ 0.37
CLN3-208ENST00000561505 ANO4Q32M45 955 aa17.35■□□□□ 0.37
CLN3-208ENST00000561505 KIAA1211LQ6NV74 962 aa17.35■□□□□ 0.37
CLN3-208ENST00000561505 CLEC20AQ6ZU45 233 aa17.35■□□□□ 0.37
CLN3-208ENST00000561505 SV2AQ7L0J3 742 aa17.35■□□□□ 0.37
CLN3-208ENST00000561505 PGBD3Q8N328 593 aa17.35■□□□□ 0.37
CLN3-208ENST00000561505 KIAA0895Q8NCT3 520 aa17.35■□□□□ 0.37
CLN3-208ENST00000561505 SLC2A14Q8TDB8 520 aa17.35■□□□□ 0.37
CLN3-208ENST00000561505 P2RY11Q96G91 374 aa17.35■□□□□ 0.37
CLN3-208ENST00000561505 XPO6Q96QU8 1125 aaKnown RBP17.35■□□□□ 0.37
CLN3-208ENST00000561505 MED10Q9BTT4 135 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms