RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 ASAH2Q9NR71 780 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 TMPRSS4Q9NRS4 437 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 SAMD15Q9P1V8 674 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 UVRAGQ9P2Y5 699 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 CDH9Q9ULB4 789 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 GRID2IPA4D2P6 1211 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 H3BRJ5 948 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 HAS3O00219 553 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 ZNF263O14978 683 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 ABCB7O75027 752 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 TIMP1P01033 207 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 RARGP13631 454 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 PPM1AP35813 382 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 ASPAP45381 313 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 TBX4P57082 545 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 NOMO3P69849 1222 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 TFDP2Q14188 446 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 MBTPS1Q14703 1052 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 WHAMMP3Q1A5X7 153 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 KRT71Q3SY84 523 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 ARHGAP15Q53QZ3 475 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 C9orf50Q5SZB4 431 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 TXNDC8Q6A555 127 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 CES5AQ6NT32 575 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 TAS1R1Q7RTX1 841 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 APTXQ7Z2E3 356 aaKnown RBP5.67□□□□□ -1.5
VPS13C-209ENST00000560637 SLFN11Q7Z7L1 901 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 NT5DC4Q86YG4 428 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 LGI2Q8N0V4 545 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 BBS5Q8N3I7 341 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 ANKRD52Q8NB46 1076 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 NOA1Q8NC60 698 aaKnown RBP5.67□□□□□ -1.5
VPS13C-209ENST00000560637 KREMEN2Q8NCW0 462 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 TBCBQ99426 244 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 MFRPQ9BY79 579 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 PRDM12Q9H4Q4 367 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 TLR8Q9NR97 1041 aaKnown RBP5.67□□□□□ -1.5
VPS13C-209ENST00000560637 RBM12Q9NTZ6 932 aaKnown RBP5.67□□□□□ -1.5
VPS13C-209ENST00000560637 VPS28Q9UK41 221 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 DYNC1LI1Q9Y6G9 523 aaKnown RBP5.67□□□□□ -1.5
VPS13C-209ENST00000560637 MAST2Q6P0Q8 1798 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 PHIPQ8WWQ0 1821 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 MYH11P35749 1972 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 CCDC66A2RUB6 948 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 TRIM43BA6NCK2 446 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 YJEFN3A6XGL0 299 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 E7ENQ6 273 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 APOL1O14791 398 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 ZNF500O60304 480 aaPredicted RBP5.67□□□□□ -1.5
VPS13C-209ENST00000560637 SETSIPP0DME0 302 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 MYBL1P10243 752 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 NNMTP40261 264 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 ARSEP51690 589 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 NTHL1P78549 312 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 TBX2Q13207 712 aaPredicted RBP5.67□□□□□ -1.5
VPS13C-209ENST00000560637 FIGNQ5HY92 759 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 INTS6LQ5JSJ4 861 aaKnown RBP5.67□□□□□ -1.5
VPS13C-209ENST00000560637 UBXN11Q5T124 520 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 MFSD7Q6UXD7 560 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 NPNTQ6UXI9 565 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 HFE2Q6ZVN8 426 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 ZNF771Q7L3S4 317 aaPredicted RBP5.67□□□□□ -1.5
VPS13C-209ENST00000560637 ANKMY2Q8IV38 441 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 TMEM86AQ8N2M4 240 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 GPR161Q8N6U8 529 aaKnown RBP5.67□□□□□ -1.5
VPS13C-209ENST00000560637 ANKRD42Q8N9B4 389 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 OR6K2Q8NGY2 324 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 TRIM43Q96BQ3 446 aaPredicted RBP5.67□□□□□ -1.5
VPS13C-209ENST00000560637 TMEM121Q9BTD3 319 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 LRRC1Q9BTT6 524 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 TM6SF2Q9BZW4 377 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 SIX2Q9NPC8 291 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 RAB6BQ9NRW1 208 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 ANAPC5Q9UJX4 755 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 LTBP1Q14766 1721 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 ZSCAN5CA6NGD5 496 aaPredicted RBP5.66□□□□□ -1.5
VPS13C-209ENST00000560637 ERICH4A6NGS2 130 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 MIF4GDA9UHW6 222 aaKnown RBP5.66□□□□□ -1.5
VPS13C-209ENST00000560637 USP12O75317 370 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 TPRP12270 2363 aaKnown RBP5.66□□□□□ -1.5
VPS13C-209ENST00000560637 MYH9P35579 1960 aaKnown RBP5.66□□□□□ -1.5
VPS13C-209ENST00000560637 MAGEA10P43363 369 aaPredicted RBP5.66□□□□□ -1.5
VPS13C-209ENST00000560637 TUBP50607 506 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 WDR5P61964 334 aaKnown RBP5.66□□□□□ -1.5
VPS13C-209ENST00000560637 TMPRSS15P98073 1019 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 SLC6A3Q01959 620 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 ROR1Q01973 937 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 PIGHQ14442 188 aaPredicted RBP5.66□□□□□ -1.5
VPS13C-209ENST00000560637 PCBP1Q15365 356 aaKnown RBP eCLIP5.66□□□□□ -1.5
VPS13C-209ENST00000560637 C1orf220Q5T0J3 134 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 GPR158Q5T848 1215 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 ZNF677Q86XU0 584 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 NUP93Q8N1F7 819 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 ZNF710Q8N1W2 664 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 PYROXD2Q8N2H3 581 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 ATPAF2Q8N5M1 289 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 SPATA4Q8NEY3 305 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 IPMKQ8NFU5 416 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 OR6P1Q8NGX9 317 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 ARAP2Q8WZ64 1704 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms