RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 SUPT20HQ8NEM7 779 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 IL17REQ8NFR9 667 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 SLC30A5Q8TAD4 765 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 GRAMD1AQ96CP6 724 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 EID2BQ96D98 161 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 ZSCAN31Q96LW9 406 aaPredicted RBP1.9□□□□□ -2.11
USP3-209ENST00000558925 FAM227BQ96M60 508 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 MOGAT1Q96PD6 335 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 HIST1H2AAQ96QV6 131 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 ADAM2Q99965 735 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 RTKNQ9BST9 563 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 MECRQ9BV79 373 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 PTDSS2Q9BVG9 487 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 TRIM5Q9C035 493 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 REXO4Q9GZR2 422 aaKnown RBP1.9□□□□□ -2.11
USP3-209ENST00000558925 TAF1DQ9H5J8 278 aaPredicted RBP1.9□□□□□ -2.11
USP3-209ENST00000558925 MSL2Q9HCI7 577 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 ZBTB26Q9HCK0 441 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 PRDM8Q9NQV8 689 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 PARPBPQ9NWS1 579 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 AURKAIP1Q9NWT8 199 aaPredicted RBP1.9□□□□□ -2.11
USP3-209ENST00000558925 MAP3K20Q9NYL2 800 aaKnown RBP1.9□□□□□ -2.11
USP3-209ENST00000558925 PDP2Q9P2J9 529 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 DNAJB11Q9UBS4 358 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 HERC5Q9UII4 1024 aaKnown RBP1.9□□□□□ -2.11
USP3-209ENST00000558925 GJD2Q9UKL4 321 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 RIMKLBQ9ULI2 386 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 DAPP1Q9UN19 280 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 CLCA2Q9UQC9 943 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 SLC27A6Q9Y2P4 619 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 XDHP47989 1333 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 PNMA6EA0A0J9YXQ4 647 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 OR2W5A6NFC9 320 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 MARCH11A6NNE9 402 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 ZAR1LA6NP61 321 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 PRSS47A8MTI9 375 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 GOLGA6L6A8MZA4 724 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 VWC2LB2RUY7 222 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 PRRT4C9JH25 899 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 J3KRW8 73 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 M0QYT0 321 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 M0QZQ0 153 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 KIAA0355O15063 1070 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 ZSCAN9O15535 394 aaPredicted RBP1.89□□□□□ -2.11
USP3-209ENST00000558925 EPB41L2O43491 1005 aaKnown RBP1.89□□□□□ -2.11
USP3-209ENST00000558925 CCNT2O60583 730 aaKnown RBP1.89□□□□□ -2.11
USP3-209ENST00000558925 LPXNO60711 386 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 CBFA2T3O75081 653 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 NDUFA10O95299 355 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 NTSR2O95665 410 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 CER1O95813 267 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 GLP2RO95838 553 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 PEX11BO96011 259 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 VIPP01282 170 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 CD4P01730 458 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 CFIP05156 583 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 FAM163BP0C2L3 166 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 IDEP14735 1019 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 CST5P28325 142 aaPredicted RBP1.89□□□□□ -2.11
USP3-209ENST00000558925 PPIFP30405 207 aaKnown RBP1.89□□□□□ -2.11
USP3-209ENST00000558925 SLC5A2P31639 672 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 LIPAP38571 399 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 PBX1P40424 430 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 CCR5P51681 352 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 ALDH18A1P54886 795 aaKnown RBP1.89□□□□□ -2.11
USP3-209ENST00000558925 FAM3BP58499 235 aaPredicted RBP1.89□□□□□ -2.11
USP3-209ENST00000558925 HHEXQ03014 270 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 FPGSQ05932 587 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 SCAPQ12770 1279 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 MTAPQ13126 283 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 RESTQ13127 1097 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 G3BP1Q13283 466 aaKnown RBP eCLIP1.89□□□□□ -2.11
USP3-209ENST00000558925 TUBB3Q13509 450 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 TP53BP2Q13625 1128 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 ATP1A4Q13733 1029 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 DLGAP5Q15398 846 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 GALNTL6Q49A17 601 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 TMEM196Q5HYL7 178 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 FBXO47Q5MNV8 452 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 CERCAMQ5T4B2 595 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 SLC9A4Q6AI14 798 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 GRHL2Q6ISB3 625 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 FAM180BQ6P0A1 224 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 MSANTD2Q6P1R3 559 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 MZT2AQ6P582 158 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 FOXR2Q6PJQ5 311 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 CLEC4GQ6UXB4 293 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 SYNE3Q6ZMZ3 975 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 SYT13Q7L8C5 426 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 MAVSQ7Z434 540 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 RASGRP3Q8IV61 690 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 CCDC117Q8IWD4 279 aaPredicted RBP1.89□□□□□ -2.11
USP3-209ENST00000558925 SLC15A3Q8IY34 581 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 SPARTQ8N0X7 666 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 ABRAQ8N0Z2 381 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 CPEB3Q8NE35 698 aaKnown RBP1.89□□□□□ -2.11
USP3-209ENST00000558925 CEP70Q8NHQ1 597 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 SPPL3Q8TCT6 385 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 SMCR8Q8TEV9 937 aaPredicted RBP1.89□□□□□ -2.11
USP3-209ENST00000558925 HERVK_113Q902F9 699 aa1.89□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 171.9 ms