RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 MAP7D3Q8IWC1 876 aa11.06□□□□□ -0.64
CUX1-217ENST00000558836 AGGF1Q8N302 714 aaeCLIP11.06□□□□□ -0.642e-7■■■■■ 57.8
CUX1-217ENST00000558836 CCDC197Q8NCU1 140 aa11.06□□□□□ -0.64
CUX1-217ENST00000558836 PLCD4Q9BRC7 762 aa11.06□□□□□ -0.64
CUX1-217ENST00000558836 CEP41Q9BYV8 373 aa11.06□□□□□ -0.64
CUX1-217ENST00000558836 TRABDQ9H4I3 376 aa11.06□□□□□ -0.64
CUX1-217ENST00000558836 PIH1D1Q9NWS0 290 aaKnown RBP11.06□□□□□ -0.64
CUX1-217ENST00000558836 MIOSQ9NXC5 875 aa11.06□□□□□ -0.64
CUX1-217ENST00000558836 RABGEF1Q9UJ41 708 aa11.06□□□□□ -0.64
CUX1-217ENST00000558836 ST3GAL5Q9UNP4 418 aa11.06□□□□□ -0.64
CUX1-217ENST00000558836 SRRM3A6NNA2 597 aaPredicted RBP11.05□□□□□ -0.64
CUX1-217ENST00000558836 CD4P01730 458 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 APRTP07741 180 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 GOT1P17174 413 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 AMPD1P23109 780 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 CYP2F1P24903 491 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 FOXN2P32314 431 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 RPA3P35244 121 aaPredicted RBP11.05□□□□□ -0.64
CUX1-217ENST00000558836 CRYBB1P53674 252 aaPredicted RBP11.05□□□□□ -0.64
CUX1-217ENST00000558836 STILQ15468 1287 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 TRABD2AQ86V40 505 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 UNC93AQ86WB7 457 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 FUKQ8N0W3 1084 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 DEFB106AQ8N104 65 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 PDIK1LQ8N165 341 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 TTC39CQ8N584 583 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 B3GALNT2Q8NCR0 500 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 TGS1Q96RS0 853 aaKnown RBP11.05□□□□□ -0.64
CUX1-217ENST00000558836 KCNK16Q96T55 309 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 NKIRAS1Q9NYS0 192 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 SAMD15Q9P1V8 674 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 LGALS13Q9UHV8 139 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 CDY2AQ9Y6F7 541 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 WDR91A4D1P6 747 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 CASTOR2A6NHX0 329 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 ZBED1O96006 694 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 KRT4P19013 534 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 L1CAMP32004 1257 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 CLCNKBP51801 687 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 BCAT1P54687 386 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 CDC42EP1Q00587 391 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 NME3Q13232 169 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 TFDP2Q14188 446 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 NBPF20Q3BBV1 942 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 MDH1BQ5I0G3 518 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 HFE2Q6ZVN8 426 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 PIGWQ7Z7B1 504 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 HASPINQ8TF76 798 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 PPM1EQ8WY54 764 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 TTC25Q96NG3 672 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 MED10Q9BTT4 135 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 GRID1Q9ULK0 1009 aa11.05□□□□□ -0.64
CUX1-217ENST00000558836 FAM155BO75949 473 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 ABHD2P08910 425 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 RGS2P41220 211 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 MAP3K7CLP57077 242 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 YWHAGP61981 247 aaKnown RBP eCLIP11.04□□□□□ -0.64
CUX1-217ENST00000558836 FAM133BQ5BKY9 247 aaKnown RBP11.04□□□□□ -0.64
CUX1-217ENST00000558836 SYPL2Q5VXT5 272 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 ARHGAP17Q68EM7 881 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 GDF6Q6KF10 455 aaPredicted RBP11.04□□□□□ -0.64
CUX1-217ENST00000558836 PCGF5Q86SE9 256 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 IFNL1Q8IU54 200 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 CRYBG2Q8N1P7 616 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 GSTCDQ8NEC7 633 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 USP6NLQ92738 828 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 CFAP36Q96G28 342 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 RHOBTB2Q9BYZ6 727 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 FOXP3Q9BZS1 431 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 NRDE2Q9H7Z3 1164 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 ALG13Q9NP73 1137 aaKnown RBP11.04□□□□□ -0.64
CUX1-217ENST00000558836 AP4E1Q9UPM8 1137 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 MRPL42Q9Y6G3 142 aaKnown RBP11.04□□□□□ -0.64
CUX1-217ENST00000558836 KBTBD13C9JR72 458 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 CA4P22748 312 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 GRIA1P42261 906 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 DNAJC3Q13217 504 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 PAQR9Q6ZVX9 377 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 TP53INP2Q8IXH6 220 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 C3orf58Q8NDZ4 430 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 ZNF560Q96MR9 790 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 KCTD15Q96SI1 283 aaPredicted RBP11.04□□□□□ -0.64
CUX1-217ENST00000558836 PAFAH2Q99487 392 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 SLCO1B3Q9NPD5 702 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 ABCF3Q9NUQ8 709 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 MTMR10Q9NXD2 777 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 GABRQQ9UN88 632 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 ZNF638Q14966 1978 aaKnown RBP11.04□□□□□ -0.64
CUX1-217ENST00000558836 FAM47DPA6NHR8 397 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 CREB3O43889 395 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 METTL18O95568 372 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 KCNE1P15382 129 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 STIP1P31948 543 aaKnown RBP11.04□□□□□ -0.64
CUX1-217ENST00000558836 CACNA2D1P54289 1103 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 PDK2Q15119 407 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 SLC1A5Q15758 541 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 SAPCD2Q86UD0 394 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 CKAP2Q8WWK9 683 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 SMC6Q96SB8 1091 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 LGMNQ99538 433 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms