RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	ACER1	Q8TDN7	264 aa		5.15	□□□□□ -1.59
SYNE2-223	ENST00000557005	JADE3	Q92613	823 aa		5.15	□□□□□ -1.59
SYNE2-223	ENST00000557005	PNPO	Q9NVS9	261 aa		5.15	□□□□□ -1.59
SYNE2-223	ENST00000557005	SEPT3	Q9UH03	358 aa		5.15	□□□□□ -1.59
SYNE2-223	ENST00000557005	CLEC11A	Q9Y240	323 aa		5.15	□□□□□ -1.59
SYNE2-223	ENST00000557005	ROBO3	Q96MS0	1386 aa		5.15	□□□□□ -1.59
SYNE2-223	ENST00000557005	COL1A1	P02452	1464 aa	Predicted RBP	5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	UBA6	A0AVT1	1052 aa	Predicted RBP	5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	CFAP99	D6REC4	459 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	MOCS2	O96007	188 aa	Predicted RBP	5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	HMGCR	P04035	888 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	CETP	P11597	493 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	CHRNB2	P17787	502 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	HMGB2	P26583	209 aa	Known RBP	5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	ABCG1	P45844	678 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	GALK1	P51570	392 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	AQP4	P55087	323 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	CACNB2	Q08289	660 aa	Predicted RBP	5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	TMEM62	Q0P6H9	643 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	BAAT	Q14032	418 aa	Predicted RBP	5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	TMEM132D	Q14C87	1099 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	ATF7IP2	Q5U623	682 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	C10orf107	Q8IVU9	208 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	CCDC60	Q8IWA6	550 aa	Predicted RBP	5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	KLHL23	Q8NBE8	558 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	SLC7A14	Q8TBB6	771 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	C10orf82	Q8WW14	230 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	ZNF669	Q96BR6	464 aa	Predicted RBP	5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	ZNF333	Q96JL9	665 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	SERAC1	Q96JX3	654 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	CDRT15	Q96T59	188 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	MTFR1L	Q9H019	292 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	MMADHC	Q9H3L0	296 aa	Predicted RBP	5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	DDX28	Q9NUL7	540 aa	Known RBP	5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	ETNK2	Q9NVF9	386 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	CHKB	Q9Y259	395 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	COMMD3-BMI1	R4GMX3	469 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005		A0A0B4J269	797 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	NPTXR	O95502	500 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	PGAM1	P18669	254 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	TGM2	P21980	687 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	PPM1F	P49593	454 aa	Predicted RBP	5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	SCNN1B	P51168	640 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	PLIN5	Q00G26	463 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	DGKZ	Q13574	1117 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	SEL1L3	Q68CR1	1132 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	PTAR1	Q7Z6K3	402 aa	Predicted RBP	5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	AMIGO2	Q86SJ2	522 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	TRABD2A	Q86V40	505 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	IFNE	Q86WN2	208 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	EXOC8	Q8IYI6	725 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	MIER2	Q8N344	545 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	FBXW8	Q8N3Y1	598 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	ZNF513	Q8N8E2	541 aa	Predicted RBP	5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	IPMK	Q8NFU5	416 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	SLC4A9	Q96Q91	983 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	NDN	Q99608	321 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	KCTD14	Q9BQ13	255 aa	Predicted RBP	5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	TMEM39B	Q9GZU3	492 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	POMK	Q9H5K3	350 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	CYLD	Q9NQC7	956 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	MAN1C1	Q9NR34	630 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	THAP1	Q9NVV9	213 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	ZNF70	Q9UC06	446 aa	Predicted RBP	5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	SUN2	Q9UH99	717 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	SCN11A	Q9UI33	1791 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	TRPC5OS	A6NMA1	111 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	GOLGA8T	H3BQL2	631 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	TGFB1I1	O43294	461 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	MPO	P05164	745 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	ERVK-10	P10266	1014 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	UQCRB	P14927	111 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	CPA3	P15088	417 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	PSMA4	P25789	261 aa	Known RBP	5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	SPR	P35270	261 aa	Predicted RBP	5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	FDFT1	P37268	417 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	CAP2	P40123	477 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	DAB2	P98082	770 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	TNFAIP1	Q13829	316 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	PGM5	Q15124	567 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	UGCG	Q16739	394 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	SLC5A9	Q2M3M2	681 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	KBTBD12	Q3ZCT8	623 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	ANO7	Q6IWH7	933 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	SLC41A1	Q8IVJ1	513 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	COLGALT1	Q8NBJ5	622 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	DCUN1D1	Q96GG9	259 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	PLEKHG4B	Q96PX9	1271 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	TARS2	Q9BW92	718 aa	Known RBP	5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	ILKAP	Q9H0C8	392 aa	Predicted RBP	5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	PTPRH	Q9HD43	1115 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	PXMP2	Q9NR77	195 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	FBXO40	Q9UH90	709 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	SOX13	Q9UN79	622 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	NAV1	Q8NEY1	1877 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	ADCY6	O43306	1168 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	DCX	O43602	365 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	PEX11A	O75192	247 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	CSPG5	O95196	566 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	TPH1	P17752	444 aa		5.14	□□□□□ -1.59

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