RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 CCT8L1PA6NM43 557 aa5.82□□□□□ -1.48
LIMA1-215ENST00000552823 CXorf49A8MYA2 514 aaPredicted RBP5.82□□□□□ -1.48
LIMA1-215ENST00000552823 TRIM49D1C9J1S8 452 aa5.82□□□□□ -1.48
LIMA1-215ENST00000552823 METTL18O95568 372 aa5.82□□□□□ -1.48
LIMA1-215ENST00000552823 LSM8O95777 96 aaKnown RBP5.82□□□□□ -1.48
LIMA1-215ENST00000552823 CPP00450 1065 aa5.82□□□□□ -1.48
LIMA1-215ENST00000552823 PFKMP08237 780 aa5.82□□□□□ -1.48
LIMA1-215ENST00000552823 HMBSP08397 361 aa5.82□□□□□ -1.48
LIMA1-215ENST00000552823 PYGBP11216 843 aa5.82□□□□□ -1.48
LIMA1-215ENST00000552823 PROZP22891 400 aa5.82□□□□□ -1.48
LIMA1-215ENST00000552823 LMNB2Q03252 620 aa5.82□□□□□ -1.48
LIMA1-215ENST00000552823 ZNF268Q14587 947 aaPredicted RBP5.82□□□□□ -1.48
LIMA1-215ENST00000552823 LDLRAD1Q5T700 205 aa5.82□□□□□ -1.48
LIMA1-215ENST00000552823 RNASEH2BQ5TBB1 312 aaKnown RBP5.82□□□□□ -1.48
LIMA1-215ENST00000552823 C9orf57Q5W0N0 161 aa5.82□□□□□ -1.48
LIMA1-215ENST00000552823 ARHGEF18Q6ZSZ5 1173 aa5.82□□□□□ -1.48
LIMA1-215ENST00000552823 PID1Q7Z2X4 250 aa5.82□□□□□ -1.48
LIMA1-215ENST00000552823 APBB1IPQ7Z5R6 666 aaPredicted RBP5.82□□□□□ -1.48
LIMA1-215ENST00000552823 MAP7D3Q8IWC1 876 aa5.82□□□□□ -1.48
LIMA1-215ENST00000552823 ADGRF2Q8IZF7 708 aa5.82□□□□□ -1.48
LIMA1-215ENST00000552823 PDCD7Q8N8D1 485 aaKnown RBP5.82□□□□□ -1.48
LIMA1-215ENST00000552823 GPATCH11Q8N954 259 aa5.82□□□□□ -1.48
LIMA1-215ENST00000552823 PPP1R14CQ8TAE6 165 aa5.82□□□□□ -1.48
LIMA1-215ENST00000552823 TCP10LQ8TDR4 215 aa5.82□□□□□ -1.48
LIMA1-215ENST00000552823 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP5.82□□□□□ -1.482e-6■■■■■ 29
LIMA1-215ENST00000552823 PGM2Q96G03 612 aa5.82□□□□□ -1.48
LIMA1-215ENST00000552823 NSRP1Q9H0G5 558 aaKnown RBP5.82□□□□□ -1.48
LIMA1-215ENST00000552823 ASB7Q9H672 318 aa5.82□□□□□ -1.48
LIMA1-215ENST00000552823 MIOSQ9NXC5 875 aa5.82□□□□□ -1.48
LIMA1-215ENST00000552823 DDX56Q9NY93 547 aaKnown RBP5.82□□□□□ -1.48
LIMA1-215ENST00000552823 AP4E1Q9UPM8 1137 aa5.82□□□□□ -1.48
LIMA1-215ENST00000552823 L3MBTL1Q9Y468 752 aa5.82□□□□□ -1.48
LIMA1-215ENST00000552823 IPPQ9Y573 584 aa5.82□□□□□ -1.48
LIMA1-215ENST00000552823 FAM47DPA6NHR8 397 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 C2CD4BA6NLJ0 364 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 GOLGA8CPA6NN73 597 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 NCAM1P13591 858 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 TARSP26639 723 aaKnown RBP5.81□□□□□ -1.48
LIMA1-215ENST00000552823 CDC25CP30307 473 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 CD52P31358 61 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 SLC26A2P50443 739 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 SLC6A3Q01959 620 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 SLC10A2Q12908 348 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-215ENST00000552823 PTK7Q13308 1070 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 OASLQ15646 514 aaKnown RBP5.81□□□□□ -1.48
LIMA1-215ENST00000552823 PPIL6Q8IXY8 311 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 ZCCHC9Q8N567 271 aaKnown RBP5.81□□□□□ -1.48
LIMA1-215ENST00000552823 PLD5Q8N7P1 536 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 UBR7Q8N806 425 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 ARMC2Q8NEN0 867 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 WNT8BQ93098 351 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 KLHL29Q96CT2 875 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 ERP27Q96DN0 273 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 B3GALT6Q96L58 329 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 RNF157Q96PX1 679 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 ULBP1Q9BZM6 244 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 ZNF518BQ9C0D4 1074 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 ECT2Q9H8V3 914 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 PCDH18Q9HCL0 1135 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 UBN1Q9NPG3 1134 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 KRT82Q9NSB4 513 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 PCMTD2Q9NV79 361 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 DDX43Q9NXZ2 648 aaKnown RBP5.81□□□□□ -1.48
LIMA1-215ENST00000552823 KLHL14Q9P2G3 628 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 ZC3H7BQ9UGR2 993 aaKnown RBP5.81□□□□□ -1.48
LIMA1-215ENST00000552823 FNDC3AQ9Y2H6 1198 aaKnown RBP5.81□□□□□ -1.48
LIMA1-215ENST00000552823 CLUHO75153 1309 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 C17orf102A2RUQ5 167 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 AP1G2O75843 785 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 CBX6O95503 412 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 DARSP14868 501 aaKnown RBP5.81□□□□□ -1.48
LIMA1-215ENST00000552823 BGNP21810 368 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 BDNFP23560 247 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 ABCD1P33897 745 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 PBX3P40426 434 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 TAF6P49848 677 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 TKTL1P51854 596 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 ZNF143P52747 638 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-215ENST00000552823 HDAC4P56524 1084 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 SESN3P58005 492 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 IL9RQ01113 521 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 STAT4Q14765 748 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 NBPF20Q3BBV1 942 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 ANKRD20A8PQ5CZ79 823 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 BBS12Q6ZW61 710 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 TRPM8Q7Z2W7 1104 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 SPATA21Q7Z572 469 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 DNAAF3Q8N9W5 541 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 C12orf50Q8NA57 414 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-215ENST00000552823 BBOF1Q8ND07 529 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 AZIN2Q96A70 460 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 SERPINB12Q96P63 405 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 RSAD1Q9HA92 442 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.81□□□□□ -1.48
LIMA1-215ENST00000552823 HAO1Q9UJM8 370 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 ST3GAL5Q9UNP4 418 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 CDY2AQ9Y6F7 541 aa5.81□□□□□ -1.48
LIMA1-215ENST00000552823 WDR27A2RRH5 827 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 CFAP69A5D8W1 941 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 M0QZ92 97 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms