RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 AP2B1P63010 937 aa16.21■□□□□ 0.19
CUX1-211ENST00000546411 SP2Q02086 613 aa16.21■□□□□ 0.19
CUX1-211ENST00000546411 RCN1Q15293 331 aa16.21■□□□□ 0.19
CUX1-211ENST00000546411 CKAP2Q8WWK9 683 aa16.21■□□□□ 0.19
CUX1-211ENST00000546411 TMA16Q96EY4 203 aaKnown RBP16.21■□□□□ 0.19
CUX1-211ENST00000546411 SRPK1Q96SB4 655 aaKnown RBP16.21■□□□□ 0.19
CUX1-211ENST00000546411 ITGA11Q9UKX5 1188 aa16.21■□□□□ 0.19
CUX1-211ENST00000546411 TELO2Q9Y4R8 837 aa16.21■□□□□ 0.19
CUX1-211ENST00000546411 WDR27A2RRH5 827 aa16.21■□□□□ 0.19
CUX1-211ENST00000546411 SMAPO00193 183 aa16.21■□□□□ 0.19
CUX1-211ENST00000546411 PFDN6O15212 129 aa16.21■□□□□ 0.19
CUX1-211ENST00000546411 IL1RL1Q01638 556 aa16.21■□□□□ 0.19
CUX1-211ENST00000546411 BST2Q10589 180 aaKnown RBP16.21■□□□□ 0.19
CUX1-211ENST00000546411 ALLCQ8N6M5 410 aa16.21■□□□□ 0.19
CUX1-211ENST00000546411 ELMO2Q96JJ3 720 aa16.21■□□□□ 0.19
CUX1-211ENST00000546411 VPS33BQ9H267 617 aa16.21■□□□□ 0.19
CUX1-211ENST00000546411 GRHL1Q9NZI5 618 aa16.21■□□□□ 0.19
CUX1-211ENST00000546411 PAEPP09466 180 aa16.21■□□□□ 0.19
CUX1-211ENST00000546411 MMP13P45452 471 aa16.21■□□□□ 0.19
CUX1-211ENST00000546411 SERPINB4P48594 390 aa16.21■□□□□ 0.19
CUX1-211ENST00000546411 PAPOLAP51003 745 aaKnown RBP16.21■□□□□ 0.19
CUX1-211ENST00000546411 CDC42EP1Q00587 391 aa16.21■□□□□ 0.19
CUX1-211ENST00000546411 LBX2Q6XYB7 198 aa16.21■□□□□ 0.19
CUX1-211ENST00000546411 MYLK2Q9H1R3 596 aa16.21■□□□□ 0.19
CUX1-211ENST00000546411 DDX43Q9NXZ2 648 aaKnown RBP16.21■□□□□ 0.19
CUX1-211ENST00000546411 ATP6V1G2O95670 118 aa16.21■□□□□ 0.18
CUX1-211ENST00000546411 TCF4P15884 667 aa16.21■□□□□ 0.18
CUX1-211ENST00000546411 RTP1P59025 263 aa16.21■□□□□ 0.18
CUX1-211ENST00000546411 FSTL1Q12841 308 aa16.21■□□□□ 0.18
CUX1-211ENST00000546411 TAF5Q15542 800 aa16.21■□□□□ 0.18
CUX1-211ENST00000546411 TMCO4Q5TGY1 634 aa16.21■□□□□ 0.18
CUX1-211ENST00000546411 MFSD14CQ5VZR4 134 aa16.21■□□□□ 0.18
CUX1-211ENST00000546411 SLC27A1Q6PCB7 646 aa16.21■□□□□ 0.18
CUX1-211ENST00000546411 CDC26Q8NHZ8 85 aa16.21■□□□□ 0.18
CUX1-211ENST00000546411 DNAJC16Q9Y2G8 782 aa16.21■□□□□ 0.18
CUX1-211ENST00000546411 STXBP5LQ9Y2K9 1186 aa16.21■□□□□ 0.18
CUX1-211ENST00000546411 EDIL3O43854 480 aa16.2■□□□□ 0.18
CUX1-211ENST00000546411 UPP2O95045 317 aa16.2■□□□□ 0.18
CUX1-211ENST00000546411 MGAT1P26572 445 aa16.2■□□□□ 0.18
CUX1-211ENST00000546411 ZNF235Q14590 738 aa16.2■□□□□ 0.18
CUX1-211ENST00000546411 LAYNQ6UX15 382 aa16.2■□□□□ 0.18
CUX1-211ENST00000546411 MON1BQ7L1V2 547 aa16.2■□□□□ 0.18
CUX1-211ENST00000546411 SCG3Q8WXD2 468 aaKnown RBP16.2■□□□□ 0.18
CUX1-211ENST00000546411 SNRNP25Q9BV90 132 aaKnown RBP16.2■□□□□ 0.18
CUX1-211ENST00000546411 TNFSF13BQ9Y275 285 aa16.2■□□□□ 0.18
CUX1-211ENST00000546411 C17orf102A2RUQ5 167 aa16.2■□□□□ 0.18
CUX1-211ENST00000546411 MT-CO1P00395 513 aa16.2■□□□□ 0.18
CUX1-211ENST00000546411 PTGIRP43119 386 aa16.2■□□□□ 0.18
CUX1-211ENST00000546411 PEX5P50542 639 aa16.2■□□□□ 0.18
CUX1-211ENST00000546411 CAPRIN2Q6IMN6 1127 aaKnown RBP16.2■□□□□ 0.18
CUX1-211ENST00000546411 MTHFD1LQ6UB35 978 aa16.2■□□□□ 0.18
CUX1-211ENST00000546411 POU5F2Q8N7G0 328 aa16.2■□□□□ 0.18
CUX1-211ENST00000546411 ATXN2LQ8WWM7 1075 aaKnown RBP16.2■□□□□ 0.18
CUX1-211ENST00000546411 ST6GALNAC4Q9H4F1 302 aa16.2■□□□□ 0.18
CUX1-211ENST00000546411 GOLGA2P5Q9HBQ8 144 aa16.2■□□□□ 0.18
CUX1-211ENST00000546411 LRRC4CQ9HCJ2 640 aa16.2■□□□□ 0.18
CUX1-211ENST00000546411 FAM8A1Q9UBU6 413 aa16.2■□□□□ 0.18
CUX1-211ENST00000546411 TJP2Q9UDY2 1190 aa16.2■□□□□ 0.18
CUX1-211ENST00000546411 PPP2R3BQ9Y5P8 575 aa16.2■□□□□ 0.18
CUX1-211ENST00000546411 CASQ2O14958 399 aaPredicted RBP16.2■□□□□ 0.18
CUX1-211ENST00000546411 TADA2AO75478 443 aa16.2■□□□□ 0.18
CUX1-211ENST00000546411 FSBPO95073 299 aa16.2■□□□□ 0.18
CUX1-211ENST00000546411 YWHAZP63104 245 aaKnown RBP16.2■□□□□ 0.18
CUX1-211ENST00000546411 SLC6A3Q01959 620 aa16.2■□□□□ 0.18
CUX1-211ENST00000546411 RASA2Q15283 850 aa16.2■□□□□ 0.18
CUX1-211ENST00000546411 DDIASQ8IXT1 998 aa16.2■□□□□ 0.18
CUX1-211ENST00000546411 SEPT5Q99719 369 aaPredicted RBP16.2■□□□□ 0.18
CUX1-211ENST00000546411 TRIM4Q9C037 500 aa16.2■□□□□ 0.18
CUX1-211ENST00000546411 SUDS3Q9H7L9 328 aaPredicted RBP16.2■□□□□ 0.18
CUX1-211ENST00000546411 PHLPP1O60346 1717 aa16.19■□□□□ 0.18
CUX1-211ENST00000546411 DOT1LQ8TEK3 1739 aa16.19■□□□□ 0.18
CUX1-211ENST00000546411 GPR25O00155 361 aa16.19■□□□□ 0.18
CUX1-211ENST00000546411 PNPLA4P41247 253 aa16.19■□□□□ 0.18
CUX1-211ENST00000546411 PLEKHA7Q6IQ23 1121 aa16.19■□□□□ 0.18
CUX1-211ENST00000546411 KRT80Q6KB66 452 aa16.19■□□□□ 0.18
CUX1-211ENST00000546411 STRA8Q7Z7C7 330 aa16.19■□□□□ 0.18
CUX1-211ENST00000546411 MIPOL1Q8TD10 442 aa16.19■□□□□ 0.18
CUX1-211ENST00000546411 KAT2BQ92831 832 aa16.19■□□□□ 0.18
CUX1-211ENST00000546411 CHST12Q9NRB3 414 aa16.19■□□□□ 0.18
CUX1-211ENST00000546411 RPTORQ8N122 1335 aa16.19■□□□□ 0.18
CUX1-211ENST00000546411 EML3Q32P44 896 aa16.19■□□□□ 0.18
CUX1-211ENST00000546411 HSP90AA5PQ58FG0 334 aa16.19■□□□□ 0.18
CUX1-211ENST00000546411 PPP1R26Q5T8A7 1209 aaPredicted RBP16.19■□□□□ 0.18
CUX1-211ENST00000546411 FAM117BQ6P1L5 589 aa16.19■□□□□ 0.18
CUX1-211ENST00000546411 SLC39A4Q6P5W5 647 aa16.19■□□□□ 0.18
CUX1-211ENST00000546411 TMEM192Q8IY95 271 aa16.19■□□□□ 0.18
CUX1-211ENST00000546411 GAD1Q99259 594 aa16.19■□□□□ 0.18
CUX1-211ENST00000546411 CXorf56Q9H5V9 222 aa16.19■□□□□ 0.18
CUX1-211ENST00000546411 ANLNQ9NQW6 1124 aa16.19■□□□□ 0.18
CUX1-211ENST00000546411 FAM53CQ9NYF3 392 aa16.19■□□□□ 0.18
CUX1-211ENST00000546411 AKAP11Q9UKA4 1901 aa16.19■□□□□ 0.18
CUX1-211ENST00000546411 TYW5A2RUC4 315 aaKnown RBP16.19■□□□□ 0.18
CUX1-211ENST00000546411 LRCH4O75427 683 aa16.19■□□□□ 0.18
CUX1-211ENST00000546411 SKAP2O75563 359 aaPredicted RBP16.19■□□□□ 0.18
CUX1-211ENST00000546411 ERBB2P04626 1255 aa16.19■□□□□ 0.18
CUX1-211ENST00000546411 GTF2A2P52657 109 aa16.19■□□□□ 0.18
CUX1-211ENST00000546411 PDCD2Q16342 344 aaPredicted RBP16.19■□□□□ 0.18
CUX1-211ENST00000546411 TXNRD3NBQ6F5E7 133 aa16.19■□□□□ 0.18
CUX1-211ENST00000546411 ZDHHC24Q6UX98 284 aa16.19■□□□□ 0.18
CUX1-211ENST00000546411 LCA5Q86VQ0 697 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms