RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 ZCCHC14Q8WYQ9 949 aaKnown RBP16.33■□□□□ 0.2
RTN3-211ENST00000542238 INTS4Q96HW7 963 aaKnown RBP16.33■□□□□ 0.2
RTN3-211ENST00000542238 ZNF396Q96N95 335 aaPredicted RBP16.33■□□□□ 0.2
RTN3-211ENST00000542238 XPO6Q96QU8 1125 aaKnown RBP16.33■□□□□ 0.2
RTN3-211ENST00000542238 FBXO44Q9H4M3 255 aa16.33■□□□□ 0.2
RTN3-211ENST00000542238 MAGEF1Q9HAY2 307 aa16.33■□□□□ 0.2
RTN3-211ENST00000542238 TLR8Q9NR97 1041 aaKnown RBP16.33■□□□□ 0.2
RTN3-211ENST00000542238 KRT82Q9NSB4 513 aa16.33■□□□□ 0.2
RTN3-211ENST00000542238 DNAJC17Q9NVM6 304 aaKnown RBP16.33■□□□□ 0.2
RTN3-211ENST00000542238 FAM92AA1XBS5 289 aa16.32■□□□□ 0.2
RTN3-211ENST00000542238 NEDD8-MDP1E9PL57 170 aa16.32■□□□□ 0.2
RTN3-211ENST00000542238 H0Y626 953 aa16.32■□□□□ 0.2
RTN3-211ENST00000542238 STX6O43752 255 aa16.32■□□□□ 0.2
RTN3-211ENST00000542238 TLR5O60602 858 aa16.32■□□□□ 0.2
RTN3-211ENST00000542238 TRIM16O95361 564 aa16.32■□□□□ 0.2
RTN3-211ENST00000542238 TRIM21P19474 475 aaKnown RBP16.32■□□□□ 0.2
RTN3-211ENST00000542238 HNRNPDQ14103 355 aaKnown RBP16.32■□□□□ 0.2
RTN3-211ENST00000542238 SCARA5Q6ZMJ2 495 aa16.32■□□□□ 0.2
RTN3-211ENST00000542238 PAQR9Q6ZVX9 377 aa16.32■□□□□ 0.2
RTN3-211ENST00000542238 HTR3DQ70Z44 454 aa16.32■□□□□ 0.2
RTN3-211ENST00000542238 PKD1L2Q7Z442 2459 aa16.32■□□□□ 0.2
RTN3-211ENST00000542238 ACOT1Q86TX2 421 aa16.32■□□□□ 0.2
RTN3-211ENST00000542238 GOLGA5Q8TBA6 731 aa16.32■□□□□ 0.2
RTN3-211ENST00000542238 BBS2Q9BXC9 721 aa16.32■□□□□ 0.2
RTN3-211ENST00000542238 GZF1Q9H116 711 aaPredicted RBP16.32■□□□□ 0.2
RTN3-211ENST00000542238 WDR35Q9P2L0 1181 aa16.32■□□□□ 0.2
RTN3-211ENST00000542238 TFIP11Q9UBB9 837 aaKnown RBP16.32■□□□□ 0.2
RTN3-211ENST00000542238 LSM7Q9UK45 103 aaKnown RBP16.32■□□□□ 0.2
RTN3-211ENST00000542238 MSRB2Q9Y3D2 182 aa16.32■□□□□ 0.2
RTN3-211ENST00000542238 BAHCC1Q9P281 2608 aa16.31■□□□□ 0.2
RTN3-211ENST00000542238 SRRM3A6NNA2 597 aaPredicted RBP16.31■□□□□ 0.2
RTN3-211ENST00000542238 ARHGAP33O14559 1287 aa16.31■□□□□ 0.2
RTN3-211ENST00000542238 CUTAO60888 179 aa16.31■□□□□ 0.2
RTN3-211ENST00000542238 SYPP08247 313 aa16.31■□□□□ 0.2
RTN3-211ENST00000542238 ATP5C1P36542 298 aaKnown RBP16.31■□□□□ 0.2
RTN3-211ENST00000542238 CASP4P49662 377 aa16.31■□□□□ 0.2
RTN3-211ENST00000542238 NCOA4Q13772 614 aa16.31■□□□□ 0.2
RTN3-211ENST00000542238 KNOP1Q1ED39 458 aaKnown RBP16.31■□□□□ 0.2
RTN3-211ENST00000542238 BMT2Q1RMZ1 405 aa16.31■□□□□ 0.2
RTN3-211ENST00000542238 EGFLAMQ63HQ2 1017 aa16.31■□□□□ 0.2
RTN3-211ENST00000542238 FUKQ8N0W3 1084 aa16.31■□□□□ 0.2
RTN3-211ENST00000542238 MINDY1Q8N5J2 469 aa16.31■□□□□ 0.2
RTN3-211ENST00000542238 IPO4Q8TEX9 1081 aaKnown RBP16.31■□□□□ 0.2
RTN3-211ENST00000542238 CAPN10Q9HC96 672 aa16.31■□□□□ 0.2
RTN3-211ENST00000542238 SLC39A2Q9NP94 309 aa16.31■□□□□ 0.2
RTN3-211ENST00000542238 FSCN3Q9NQT6 498 aa16.31■□□□□ 0.2
RTN3-211ENST00000542238 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.31■□□□□ 0.21e-6■■■■■ 88.9
RTN3-211ENST00000542238 CYP8B1Q9UNU6 501 aa16.31■□□□□ 0.2
RTN3-211ENST00000542238 PCDH15Q96QU1 1955 aa16.3■□□□□ 0.2
RTN3-211ENST00000542238 IGHV1OR15-9A0A0B4J2B8 117 aa16.3■□□□□ 0.2
RTN3-211ENST00000542238 PVALEFA0A1B0GWK0 134 aa16.3■□□□□ 0.2
RTN3-211ENST00000542238 A0A1W2PQD8 194 aa16.3■□□□□ 0.2
RTN3-211ENST00000542238 A0A1W2PQF6 199 aa16.3■□□□□ 0.2
RTN3-211ENST00000542238 TRIM24O15164 1050 aa16.3■□□□□ 0.2
RTN3-211ENST00000542238 CACNG3O60359 315 aa16.3■□□□□ 0.2
RTN3-211ENST00000542238 NDUFS2O75306 463 aa16.3■□□□□ 0.2
RTN3-211ENST00000542238 TYRP14679 529 aa16.3■□□□□ 0.2
RTN3-211ENST00000542238 EHHADHQ08426 723 aa16.3■□□□□ 0.2
RTN3-211ENST00000542238 SGSM1Q2NKQ1 1148 aa16.3■□□□□ 0.2
RTN3-211ENST00000542238 SYCP2LQ5T4T6 812 aa16.3■□□□□ 0.2
RTN3-211ENST00000542238 TPGS1Q6ZTW0 290 aa16.3■□□□□ 0.2
RTN3-211ENST00000542238 MIB1Q86YT6 1006 aa16.3■□□□□ 0.2
RTN3-211ENST00000542238 RGL4Q8IZJ4 473 aa16.3■□□□□ 0.2
RTN3-211ENST00000542238 TRIML1Q8N9V2 468 aa16.3■□□□□ 0.2
RTN3-211ENST00000542238 SLC2A14Q8TDB8 520 aa16.3■□□□□ 0.2
RTN3-211ENST00000542238 PARD3BQ8TEW8 1205 aa16.3■□□□□ 0.2
RTN3-211ENST00000542238 WBP2Q969T9 261 aa16.3■□□□□ 0.2
RTN3-211ENST00000542238 HSPA12BQ96MM6 686 aa16.3■□□□□ 0.2
RTN3-211ENST00000542238 SMOQ99835 787 aa16.3■□□□□ 0.2
RTN3-211ENST00000542238 KLF16Q9BXK1 252 aaPredicted RBP16.3■□□□□ 0.2
RTN3-211ENST00000542238 BLZF1Q9H2G9 400 aa16.3■□□□□ 0.2
RTN3-211ENST00000542238 FAM124BQ9H5Z6 455 aaPredicted RBP16.3■□□□□ 0.2
RTN3-211ENST00000542238 FOXD4L1Q9NU39 408 aa16.3■□□□□ 0.2
RTN3-211ENST00000542238 SUSD2Q9UGT4 822 aa16.3■□□□□ 0.2
RTN3-211ENST00000542238 KLK13Q9UKR3 277 aa16.3■□□□□ 0.2
RTN3-211ENST00000542238 HCN2Q9UL51 889 aa16.3■□□□□ 0.2
RTN3-211ENST00000542238 LRRIQ3A6PVS8 624 aaPredicted RBP16.29■□□□□ 0.2
RTN3-211ENST00000542238 POLR2DO15514 142 aaKnown RBP16.29■□□□□ 0.2
RTN3-211ENST00000542238 YEATS4O95619 227 aa16.29■□□□□ 0.2
RTN3-211ENST00000542238 C4BPAP04003 597 aaKnown RBP16.29■□□□□ 0.2
RTN3-211ENST00000542238 CCDC130P13994 396 aa16.29■□□□□ 0.2
RTN3-211ENST00000542238 NDUFV2P19404 249 aa16.29■□□□□ 0.2
RTN3-211ENST00000542238 DGKGP49619 791 aa16.29■□□□□ 0.2
RTN3-211ENST00000542238 MAP3K7CLP57077 242 aa16.29■□□□□ 0.2
RTN3-211ENST00000542238 CLDN10P78369 228 aa16.29■□□□□ 0.2
RTN3-211ENST00000542238 ZNF423Q2M1K9 1284 aa16.29■□□□□ 0.2
RTN3-211ENST00000542238 SHC4Q6S5L8 630 aa16.29■□□□□ 0.2
RTN3-211ENST00000542238 UNC93AQ86WB7 457 aa16.29■□□□□ 0.2
RTN3-211ENST00000542238 CRYBG2Q8N1P7 616 aa16.29■□□□□ 0.2
RTN3-211ENST00000542238 ZMIZ2Q8NF64 920 aa16.29■□□□□ 0.2
RTN3-211ENST00000542238 PLEKHO2Q8TD55 490 aa16.29■□□□□ 0.2
RTN3-211ENST00000542238 FOXJ1Q92949 421 aa16.29■□□□□ 0.2
RTN3-211ENST00000542238 ACOX2Q99424 681 aa16.29■□□□□ 0.2
RTN3-211ENST00000542238 GABRG3Q99928 467 aa16.29■□□□□ 0.2
RTN3-211ENST00000542238 SDCBP2Q9H190 292 aa16.29■□□□□ 0.2
RTN3-211ENST00000542238 CSNK1G1Q9HCP0 422 aa16.29■□□□□ 0.2
RTN3-211ENST00000542238 MARK1Q9P0L2 795 aa16.29■□□□□ 0.2
RTN3-211ENST00000542238 ASPMQ8IZT6 3477 aa16.29■□□□□ 0.2
RTN3-211ENST00000542238 ANKRD11Q6UB99 2663 aaPredicted RBP16.28■□□□□ 0.2
RTN3-211ENST00000542238 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms