RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 SESN2P58004 480 aaPredicted RBP17.6■□□□□ 0.41
USP28-208ENST00000540438 ZCCHC23Q6ZST2 131 aa17.6■□□□□ 0.41
USP28-208ENST00000540438 ACTR5Q9H9F9 607 aaPredicted RBP17.6■□□□□ 0.41
USP28-208ENST00000540438 PCDH18Q9HCL0 1135 aa17.6■□□□□ 0.41
USP28-208ENST00000540438 SLC5A4Q9NY91 659 aa17.6■□□□□ 0.41
USP28-208ENST00000540438 LGALS13Q9UHV8 139 aa17.6■□□□□ 0.41
USP28-208ENST00000540438 MYL3P08590 195 aa17.59■□□□□ 0.41
USP28-208ENST00000540438 CPA2P48052 419 aa17.59■□□□□ 0.41
USP28-208ENST00000540438 ACVR2BQ13705 512 aa17.59■□□□□ 0.41
USP28-208ENST00000540438 DCAF6Q58WW2 860 aa17.59■□□□□ 0.41
USP28-208ENST00000540438 NIPA2Q8N8Q9 360 aa17.59■□□□□ 0.41
USP28-208ENST00000540438 ATP11CQ8NB49 1132 aa17.59■□□□□ 0.41
USP28-208ENST00000540438 CCNYQ8ND76 341 aa17.59■□□□□ 0.41
USP28-208ENST00000540438 STKLD1Q8NE28 680 aa17.59■□□□□ 0.41
USP28-208ENST00000540438 STAMBPL1Q96FJ0 436 aa17.59■□□□□ 0.41
USP28-208ENST00000540438 FBXO6Q9NRD1 293 aaPredicted RBP17.59■□□□□ 0.41
USP28-208ENST00000540438 SHOC2Q9UQ13 582 aa17.59■□□□□ 0.41
USP28-208ENST00000540438 CHKBQ9Y259 395 aa17.59■□□□□ 0.41
USP28-208ENST00000540438 OTOFQ9HC10 1997 aa17.59■□□□□ 0.41
USP28-208ENST00000540438 MT-ND3P03897 115 aa17.59■□□□□ 0.41
USP28-208ENST00000540438 P4HA1P13674 534 aa17.59■□□□□ 0.41
USP28-208ENST00000540438 GBP2P32456 591 aaPredicted RBP17.59■□□□□ 0.41
USP28-208ENST00000540438 OLFML1Q6UWY5 402 aa17.59■□□□□ 0.41
USP28-208ENST00000540438 CROCCP2Q86T23 111 aa17.59■□□□□ 0.41
USP28-208ENST00000540438 PPTC7Q8NI37 304 aa17.59■□□□□ 0.41
USP28-208ENST00000540438 ZNF75CPQ92670 426 aaPredicted RBP17.59■□□□□ 0.41
USP28-208ENST00000540438 NOD2Q9HC29 1040 aa17.59■□□□□ 0.41
USP28-208ENST00000540438 SMYD2Q9NRG4 433 aa17.59■□□□□ 0.41
USP28-208ENST00000540438 FLRT1Q9NZU1 646 aa17.59■□□□□ 0.41
USP28-208ENST00000540438 SLC12A4Q9UP95 1085 aa17.59■□□□□ 0.41
USP28-208ENST00000540438 GAS2O43903 313 aaKnown RBP17.58■□□□□ 0.41
USP28-208ENST00000540438 CYP2F1P24903 491 aa17.58■□□□□ 0.41
USP28-208ENST00000540438 TAP1Q03518 808 aa17.58■□□□□ 0.41
USP28-208ENST00000540438 SLC20A2Q08357 652 aa17.58■□□□□ 0.41
USP28-208ENST00000540438 EML3Q32P44 896 aa17.58■□□□□ 0.41
USP28-208ENST00000540438 HFE2Q6ZVN8 426 aa17.58■□□□□ 0.41
USP28-208ENST00000540438 MTDHQ86UE4 582 aaKnown RBP17.58■□□□□ 0.41
USP28-208ENST00000540438 MAML3Q96JK9 1138 aa17.58■□□□□ 0.41
USP28-208ENST00000540438 USP29Q9HBJ7 922 aa17.58■□□□□ 0.41
USP28-208ENST00000540438 TRIM49D1C9J1S8 452 aa17.58■□□□□ 0.4
USP28-208ENST00000540438 OAS1P00973 400 aaKnown RBP17.58■□□□□ 0.4
USP28-208ENST00000540438 AMHP03971 560 aa17.58■□□□□ 0.4
USP28-208ENST00000540438 COPS2P61201 443 aa17.58■□□□□ 0.4
USP28-208ENST00000540438 ITIH4Q14624 930 aa17.58■□□□□ 0.4
USP28-208ENST00000540438 MTFR1Q15390 333 aa17.58■□□□□ 0.4
USP28-208ENST00000540438 LCLAT1Q6UWP7 414 aa17.58■□□□□ 0.4
USP28-208ENST00000540438 POLNQ7Z5Q5 900 aa17.58■□□□□ 0.4
USP28-208ENST00000540438 NME8Q8N427 588 aa17.58■□□□□ 0.4
USP28-208ENST00000540438 TBCBQ99426 244 aa17.58■□□□□ 0.4
USP28-208ENST00000540438 RSAD1Q9HA92 442 aa17.58■□□□□ 0.4
USP28-208ENST00000540438 SPON1Q9HCB6 807 aa17.58■□□□□ 0.4
USP28-208ENST00000540438 GBA2Q9HCG7 927 aaPredicted RBP17.58■□□□□ 0.4
USP28-208ENST00000540438 ARMCX1Q9P291 453 aa17.58■□□□□ 0.4
USP28-208ENST00000540438 KCNK1O00180 336 aa17.58■□□□□ 0.4
USP28-208ENST00000540438 INHBAP08476 426 aa17.58■□□□□ 0.4
USP28-208ENST00000540438 SMIM10L2AP0DMW4 78 aa17.58■□□□□ 0.4
USP28-208ENST00000540438 SMIM10L2BP0DMW5 78 aa17.58■□□□□ 0.4
USP28-208ENST00000540438 GNL1P36915 607 aaPredicted RBP17.58■□□□□ 0.4
USP28-208ENST00000540438 TNFAIP2Q03169 654 aa17.58■□□□□ 0.4
USP28-208ENST00000540438 KCNT2Q6UVM3 1135 aa17.58■□□□□ 0.4
USP28-208ENST00000540438 TTC7BQ86TV6 843 aa17.58■□□□□ 0.4
USP28-208ENST00000540438 DENND1AQ8TEH3 1009 aa17.58■□□□□ 0.4
USP28-208ENST00000540438 DCAKDQ8WVC6 231 aa17.58■□□□□ 0.4
USP28-208ENST00000540438 MOCOSQ96EN8 888 aa17.58■□□□□ 0.4
USP28-208ENST00000540438 APOL2Q9BQE5 337 aa17.58■□□□□ 0.4
USP28-208ENST00000540438 ASB7Q9H672 318 aa17.58■□□□□ 0.4
USP28-208ENST00000540438 NUP205Q92621 2012 aa17.57■□□□□ 0.4
USP28-208ENST00000540438 ANK1P16157 1881 aa17.57■□□□□ 0.4
USP28-208ENST00000540438 APOL1O14791 398 aa17.57■□□□□ 0.4
USP28-208ENST00000540438 LPXNO60711 386 aa17.57■□□□□ 0.4
USP28-208ENST00000540438 ATP6V1G2O95670 118 aa17.57■□□□□ 0.4
USP28-208ENST00000540438 RDXP35241 583 aaKnown RBP17.57■□□□□ 0.4
USP28-208ENST00000540438 ADIGQ0VDE8 80 aa17.57■□□□□ 0.4
USP28-208ENST00000540438 LACTB2Q53H82 288 aaPredicted RBP17.57■□□□□ 0.4
USP28-208ENST00000540438 C16orf46Q6P387 395 aa17.57■□□□□ 0.4
USP28-208ENST00000540438 USP6NLQ92738 828 aa17.57■□□□□ 0.4
USP28-208ENST00000540438 TINF2Q9BSI4 451 aa17.57■□□□□ 0.4
USP28-208ENST00000540438 ZC3H7BQ9UGR2 993 aaKnown RBP17.57■□□□□ 0.4
USP28-208ENST00000540438 SRRM3A6NNA2 597 aaPredicted RBP17.57■□□□□ 0.4
USP28-208ENST00000540438 SLC26A2P50443 739 aa17.57■□□□□ 0.4
USP28-208ENST00000540438 SLC6A3Q01959 620 aa17.57■□□□□ 0.4
USP28-208ENST00000540438 ENPEPQ07075 957 aa17.57■□□□□ 0.4
USP28-208ENST00000540438 NOMO1Q15155 1222 aa17.57■□□□□ 0.4
USP28-208ENST00000540438 GPR162Q16538 588 aa17.57■□□□□ 0.4
USP28-208ENST00000540438 OLFML2BQ68BL8 750 aa17.57■□□□□ 0.4
USP28-208ENST00000540438 AGAP11Q8TF27 550 aa17.57■□□□□ 0.4
USP28-208ENST00000540438 KCNK16Q96T55 309 aa17.57■□□□□ 0.4
USP28-208ENST00000540438 CCDC134Q9H6E4 229 aa17.57■□□□□ 0.4
USP28-208ENST00000540438 UBP1Q9NZI7 540 aa17.57■□□□□ 0.4
USP28-208ENST00000540438 TTLL3Q9Y4R7 772 aa17.57■□□□□ 0.4
USP28-208ENST00000540438 RGPD3A6NKT7 1758 aaPredicted RBP17.57■□□□□ 0.4
USP28-208ENST00000540438 RGPD4Q7Z3J3 1758 aa17.57■□□□□ 0.4
USP28-208ENST00000540438 CFAP69A5D8W1 941 aa17.56■□□□□ 0.4
USP28-208ENST00000540438 TYROBPO43914 113 aa17.56■□□□□ 0.4
USP28-208ENST00000540438 UPP2O95045 317 aa17.56■□□□□ 0.4
USP28-208ENST00000540438 NQO1P15559 274 aaKnown RBP17.56■□□□□ 0.4
USP28-208ENST00000540438 YWHAZP63104 245 aaKnown RBP17.56■□□□□ 0.4
USP28-208ENST00000540438 AP1B1Q10567 949 aa17.56■□□□□ 0.4
USP28-208ENST00000540438 TAF1BQ53T94 588 aaPredicted RBP17.56■□□□□ 0.4
USP28-208ENST00000540438 SYPL2Q5VXT5 272 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms