RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 CCDC26Q8TAB7 109 aa13.28□□□□□ -0.28
CLSTN3-208ENST00000538933 CEP76Q8TAP6 659 aa13.28□□□□□ -0.28
CLSTN3-208ENST00000538933 TMEM174Q8WUU8 243 aa13.28□□□□□ -0.28
CLSTN3-208ENST00000538933 ATP2A3Q93084 1043 aa13.28□□□□□ -0.28
CLSTN3-208ENST00000538933 SENP8Q96LD8 212 aa13.28□□□□□ -0.28
CLSTN3-208ENST00000538933 CYP2S1Q96SQ9 504 aa13.28□□□□□ -0.28
CLSTN3-208ENST00000538933 TUBGCP2Q9BSJ2 902 aa13.28□□□□□ -0.28
CLSTN3-208ENST00000538933 TRIM5Q9C035 493 aa13.28□□□□□ -0.28
CLSTN3-208ENST00000538933 MMRN2Q9H8L6 949 aa13.28□□□□□ -0.28
CLSTN3-208ENST00000538933 PLEKHA5Q9HAU0 1116 aa13.28□□□□□ -0.28
CLSTN3-208ENST00000538933 TAB2Q9NYJ8 693 aa13.28□□□□□ -0.28
CLSTN3-208ENST00000538933 PIEZO2Q9H5I5 2752 aa13.27□□□□□ -0.28
CLSTN3-208ENST00000538933 A0A087WV48 116 aa13.27□□□□□ -0.29
CLSTN3-208ENST00000538933 ARHGAP33O14559 1287 aa13.27□□□□□ -0.29
CLSTN3-208ENST00000538933 TADA3O75528 432 aa13.27□□□□□ -0.29
CLSTN3-208ENST00000538933 IL18RAPO95256 599 aa13.27□□□□□ -0.29
CLSTN3-208ENST00000538933 CYP11A1P05108 521 aa13.27□□□□□ -0.29
CLSTN3-208ENST00000538933 ADRB2P07550 413 aa13.27□□□□□ -0.29
CLSTN3-208ENST00000538933 DLATP10515 647 aaKnown RBP13.27□□□□□ -0.29
CLSTN3-208ENST00000538933 ATP1A3P13637 1013 aa13.27□□□□□ -0.29
CLSTN3-208ENST00000538933 TNNI1P19237 187 aa13.27□□□□□ -0.29
CLSTN3-208ENST00000538933 MRPS21P82921 87 aaKnown RBP13.27□□□□□ -0.29
CLSTN3-208ENST00000538933 FANCCQ00597 558 aa13.27□□□□□ -0.29
CLSTN3-208ENST00000538933 CYP24A1Q07973 514 aa13.27□□□□□ -0.29
CLSTN3-208ENST00000538933 MESP2Q0VG99 397 aa13.27□□□□□ -0.29
CLSTN3-208ENST00000538933 SLC14A1Q13336 389 aa13.27□□□□□ -0.29
CLSTN3-208ENST00000538933 KRT31Q15323 416 aa13.27□□□□□ -0.29
CLSTN3-208ENST00000538933 MAN2A1Q16706 1144 aa13.27□□□□□ -0.29
CLSTN3-208ENST00000538933 FKBP15Q5T1M5 1219 aa13.27□□□□□ -0.29
CLSTN3-208ENST00000538933 EFCAB13Q8IY85 973 aa13.27□□□□□ -0.29
CLSTN3-208ENST00000538933 IL17RCQ8NAC3 791 aa13.27□□□□□ -0.29
CLSTN3-208ENST00000538933 ZSWIM2Q8NEG5 633 aa13.27□□□□□ -0.29
CLSTN3-208ENST00000538933 CCDC127Q96BQ5 260 aa13.27□□□□□ -0.29
CLSTN3-208ENST00000538933 VPS16Q9H269 839 aa13.27□□□□□ -0.29
CLSTN3-208ENST00000538933 CPSF3Q9UKF6 684 aaKnown RBP13.27□□□□□ -0.29
CLSTN3-208ENST00000538933 UBQLN1Q9UMX0 589 aaKnown RBP13.27□□□□□ -0.29
CLSTN3-208ENST00000538933 PTPRQQ9UMZ3 2332 aa13.27□□□□□ -0.29
CLSTN3-208ENST00000538933 SGK1O00141 431 aa13.26□□□□□ -0.29
CLSTN3-208ENST00000538933 TK2O00142 265 aa13.26□□□□□ -0.29
CLSTN3-208ENST00000538933 CBFA2T3O75081 653 aa13.26□□□□□ -0.29
CLSTN3-208ENST00000538933 PLA2G2AP14555 144 aa13.26□□□□□ -0.29
CLSTN3-208ENST00000538933 ZNF18P17022 549 aa13.26□□□□□ -0.29
CLSTN3-208ENST00000538933 COPB1P53618 953 aaKnown RBP13.26□□□□□ -0.29
CLSTN3-208ENST00000538933 ATXN3P54252 364 aaPredicted RBP13.26□□□□□ -0.29
CLSTN3-208ENST00000538933 MARSP56192 900 aaKnown RBP13.26□□□□□ -0.29
CLSTN3-208ENST00000538933 UBASH3AP57075 661 aa13.26□□□□□ -0.29
CLSTN3-208ENST00000538933 USP4Q13107 963 aa13.26□□□□□ -0.29
CLSTN3-208ENST00000538933 TOGARAM2Q6ZUX3 1019 aa13.26□□□□□ -0.29
CLSTN3-208ENST00000538933 GLRX5Q86SX6 157 aa13.26□□□□□ -0.29
CLSTN3-208ENST00000538933 TTC30AQ86WT1 665 aa13.26□□□□□ -0.29
CLSTN3-208ENST00000538933 ALLCQ8N6M5 410 aa13.26□□□□□ -0.29
CLSTN3-208ENST00000538933 STKLD1Q8NE28 680 aa13.26□□□□□ -0.29
CLSTN3-208ENST00000538933 WHAMMQ8TF30 809 aa13.26□□□□□ -0.29
CLSTN3-208ENST00000538933 C2orf15Q8WU43 125 aaKnown RBP13.26□□□□□ -0.29
CLSTN3-208ENST00000538933 UBL7Q96S82 380 aaPredicted RBP13.26□□□□□ -0.29
CLSTN3-208ENST00000538933 LIMA1Q9UHB6 759 aaKnown RBP13.26□□□□□ -0.29
CLSTN3-208ENST00000538933 R3HCC1Q9Y3T6 440 aaKnown RBP13.26□□□□□ -0.29
CLSTN3-208ENST00000538933 SPTA1P02549 2419 aa13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 A0A0A0MRY4 1105 aa13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 LACTBL1A8MY62 500 aa13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 PIRO00625 290 aa13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 ADAM23O75077 832 aa13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 ALDH1A2O94788 518 aa13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 TNNC2P02585 160 aa13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 AFPP02771 609 aaKnown RBP13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 TMEM191BP0C7N4 346 aa13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 TRIM49P0CI25 452 aa13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 TRIM49CP0CI26 452 aa13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 ODC1P11926 461 aa13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 IFNAR2P48551 515 aa13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 ZXDBP98169 803 aa13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 POU5F1Q01860 360 aaKnown RBP13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 CETN1Q12798 172 aa13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 PSMD6Q15008 389 aa13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 ENOX2Q16206 610 aaKnown RBP13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 TAF12Q16514 161 aa13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 VWA3BQ502W6 1294 aa13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 EMC10Q5UCC4 262 aa13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 CRELD2Q6UXH1 353 aaPredicted RBP13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 IRF2BP1Q8IU81 584 aa13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 TRIM59Q8IWR1 403 aa13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 CD302Q8IX05 232 aa13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 TXNDC5Q8NBS9 432 aaKnown RBP13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 SPPL2BQ8TCT7 592 aa13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 TMC2Q8TDI7 906 aa13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 CACTINQ8WUQ7 758 aaKnown RBP13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 MRPS31Q92665 395 aaKnown RBP13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 ANKRD36BP1Q96IX9 119 aa13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 SPACA7Q96KW9 195 aa13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 PCMTD1Q96MG8 357 aaPredicted RBP13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 HSD3B7Q9H2F3 369 aa13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 PDE11AQ9HCR9 933 aa13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 POLMQ9NP87 494 aaPredicted RBP13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 IFNKQ9P0W0 207 aa13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 GCNT4Q9P109 453 aa13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 KIAA1522Q9P206 1035 aaPredicted RBP13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 KNL1Q8NG31 2342 aa13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 KNTC1P50748 2209 aa13.25□□□□□ -0.29
CLSTN3-208ENST00000538933 XPOTO43592 962 aaKnown RBP13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms