RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 WIPF3A6NGB9 483 aa4.75□□□□□ -1.65
CD44-235ENST00000532339 DNAJC9-AS1A6NH13 148 aa4.75□□□□□ -1.65
CD44-235ENST00000532339 CGB1A6NKQ9 187 aa4.75□□□□□ -1.65
CD44-235ENST00000532339 VPS4BO75351 444 aa4.75□□□□□ -1.65
CD44-235ENST00000532339 KIF20AO95235 890 aa4.75□□□□□ -1.65
CD44-235ENST00000532339 FTLP02792 175 aaPredicted RBP4.75□□□□□ -1.65
CD44-235ENST00000532339 PF4V1P10720 104 aa4.75□□□□□ -1.65
CD44-235ENST00000532339 ZFXP17010 805 aaPredicted RBP4.75□□□□□ -1.65
CD44-235ENST00000532339 PHKA1P46020 1223 aa4.75□□□□□ -1.65
CD44-235ENST00000532339 BMPR2Q13873 1038 aa4.75□□□□□ -1.65
CD44-235ENST00000532339 RBM20Q5T481 1227 aaKnown RBP4.75□□□□□ -1.65
CD44-235ENST00000532339 TEDDM1Q5T9Z0 273 aa4.75□□□□□ -1.65
CD44-235ENST00000532339 CXorf57Q6NSI4 855 aaKnown RBP4.75□□□□□ -1.65
CD44-235ENST00000532339 USP45Q70EL2 814 aa4.75□□□□□ -1.65
CD44-235ENST00000532339 TPH2Q8IWU9 490 aa4.75□□□□□ -1.65
CD44-235ENST00000532339 PRR18Q8N4B5 295 aa4.75□□□□□ -1.65
CD44-235ENST00000532339 CAMKK1Q8N5S9 505 aa4.75□□□□□ -1.65
CD44-235ENST00000532339 TNPO1Q92973 898 aaKnown RBP4.75□□□□□ -1.65
CD44-235ENST00000532339 FAM136AQ96C01 138 aa4.75□□□□□ -1.65
CD44-235ENST00000532339 FAM167AQ96KS9 214 aa4.75□□□□□ -1.65
CD44-235ENST00000532339 GDF15Q99988 308 aa4.75□□□□□ -1.65
CD44-235ENST00000532339 MRPL46Q9H2W6 279 aaKnown RBP4.75□□□□□ -1.65
CD44-235ENST00000532339 MRPS18AQ9NVS2 196 aaKnown RBP4.75□□□□□ -1.65
CD44-235ENST00000532339 ABCF2Q9UG63 623 aa4.75□□□□□ -1.65
CD44-235ENST00000532339 ADAM21Q9UKJ8 722 aa4.75□□□□□ -1.65
CD44-235ENST00000532339 PADI4Q9UM07 663 aa4.75□□□□□ -1.65
CD44-235ENST00000532339 AGAP1Q9UPQ3 857 aa4.75□□□□□ -1.65
CD44-235ENST00000532339 ATRXP46100 2492 aa4.75□□□□□ -1.65
CD44-235ENST00000532339 CDH23Q9H251 3354 aa4.75□□□□□ -1.65
CD44-235ENST00000532339 ZDBF2Q9HCK1 2354 aa4.75□□□□□ -1.65
CD44-235ENST00000532339 CD163L1Q9NR16 1453 aa4.75□□□□□ -1.65
CD44-235ENST00000532339 AOX1Q06278 1338 aa4.74□□□□□ -1.65
CD44-235ENST00000532339 PCDH11XQ9BZA7 1347 aa4.74□□□□□ -1.65
CD44-235ENST00000532339 PCDH11YQ9BZA8 1340 aa4.74□□□□□ -1.65
CD44-235ENST00000532339 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.74□□□□□ -1.65
CD44-235ENST00000532339 NXPH3O95157 252 aa4.74□□□□□ -1.65
CD44-235ENST00000532339 SERPINB2P05120 415 aa4.74□□□□□ -1.65
CD44-235ENST00000532339 EBLN1P0CF75 366 aa4.74□□□□□ -1.65
CD44-235ENST00000532339 CHRM3P20309 590 aa4.74□□□□□ -1.65
CD44-235ENST00000532339 TM4SF4P48230 202 aa4.74□□□□□ -1.65
CD44-235ENST00000532339 GCLCP48506 637 aaPredicted RBP4.74□□□□□ -1.65
CD44-235ENST00000532339 CCT8P50990 548 aa4.74□□□□□ -1.65
CD44-235ENST00000532339 KCTD2Q14681 263 aa4.74□□□□□ -1.65
CD44-235ENST00000532339 TBCCQ15814 346 aa4.74□□□□□ -1.65
CD44-235ENST00000532339 SUMO4Q6EEV6 95 aa4.74□□□□□ -1.65
CD44-235ENST00000532339 ZNF551Q7Z340 670 aaPredicted RBP4.74□□□□□ -1.65
CD44-235ENST00000532339 PPP1R32Q7Z5V6 425 aa4.74□□□□□ -1.65
CD44-235ENST00000532339 UBE2Q1Q7Z7E8 422 aa4.74□□□□□ -1.65
CD44-235ENST00000532339 USP37Q86T82 979 aa4.74□□□□□ -1.65
CD44-235ENST00000532339 TDHQ8IZJ6 230 aa4.74□□□□□ -1.65
CD44-235ENST00000532339 FAM109AQ8N4B1 249 aa4.74□□□□□ -1.65
CD44-235ENST00000532339 ATRIPQ8WXE1 791 aa4.74□□□□□ -1.65
CD44-235ENST00000532339 SMG7Q92540 1137 aaKnown RBP4.74□□□□□ -1.65
CD44-235ENST00000532339 DPF1Q92782 380 aa4.74□□□□□ -1.65
CD44-235ENST00000532339 NELL2Q99435 816 aa4.74□□□□□ -1.65
CD44-235ENST00000532339 BRIP1Q9BX63 1249 aa4.74□□□□□ -1.65
CD44-235ENST00000532339 SLC29A3Q9BZD2 475 aa4.74□□□□□ -1.65
CD44-235ENST00000532339 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.74□□□□□ -1.65
CD44-235ENST00000532339 SERTAD4Q9NUC0 356 aa4.74□□□□□ -1.65
CD44-235ENST00000532339 LMBRD1Q9NUN5 540 aa4.74□□□□□ -1.65
CD44-235ENST00000532339 PNMA8BQ9ULN7 279 aaPredicted RBP4.74□□□□□ -1.65
CD44-235ENST00000532339 KDRP35968 1356 aa4.74□□□□□ -1.65
CD44-235ENST00000532339 NRXN2Q9P2S2 1712 aa4.74□□□□□ -1.65
CD44-235ENST00000532339 TTC21BQ7Z4L5 1316 aa4.73□□□□□ -1.65
CD44-235ENST00000532339 BCORQ6W2J9 1755 aa4.73□□□□□ -1.65
CD44-235ENST00000532339 POU2F2P09086 479 aa4.73□□□□□ -1.65
CD44-235ENST00000532339 TYRP14679 529 aa4.73□□□□□ -1.65
CD44-235ENST00000532339 DRD4P21917 467 aa4.73□□□□□ -1.65
CD44-235ENST00000532339 TOB1P50616 345 aaPredicted RBP4.73□□□□□ -1.65
CD44-235ENST00000532339 SLC10A2Q12908 348 aaPredicted RBP4.73□□□□□ -1.65
CD44-235ENST00000532339 MAP9Q49MG5 647 aa4.73□□□□□ -1.65
CD44-235ENST00000532339 SLC9C1Q4G0N8 1177 aa4.73□□□□□ -1.65
CD44-235ENST00000532339 TMEM31Q5JXX7 168 aa4.73□□□□□ -1.65
CD44-235ENST00000532339 FAM160B1Q5W0V3 765 aa4.73□□□□□ -1.65
CD44-235ENST00000532339 PAPD7Q5XG87 772 aaKnown RBP4.73□□□□□ -1.65
CD44-235ENST00000532339 SFRP4Q6FHJ7 346 aaPredicted RBP4.73□□□□□ -1.65
CD44-235ENST00000532339 ERO1AQ96HE7 468 aa4.73□□□□□ -1.65
CD44-235ENST00000532339 CDX2Q99626 313 aaPredicted RBP4.73□□□□□ -1.65
CD44-235ENST00000532339 RNF7Q9UBF6 113 aa4.73□□□□□ -1.65
CD44-235ENST00000532339 ASAP1Q9ULH1 1129 aa4.73□□□□□ -1.65
CD44-235ENST00000532339 ANKRD6Q9Y2G4 727 aa4.73□□□□□ -1.65
CD44-235ENST00000532339 CARMIL3Q8ND23 1372 aa4.73□□□□□ -1.65
CD44-235ENST00000532339 EPG5Q9HCE0 2579 aa4.73□□□□□ -1.65
CD44-235ENST00000532339 FAM208AQ9UK61 1670 aaKnown RBP4.73□□□□□ -1.65
CD44-235ENST00000532339 GOLGA6CA6NDK9 693 aa4.72□□□□□ -1.65
CD44-235ENST00000532339 GOLGA6BA6NDN3 693 aa4.72□□□□□ -1.65
CD44-235ENST00000532339 LINC01548A6NM66 108 aa4.72□□□□□ -1.65
CD44-235ENST00000532339 M0QYG6 137 aa4.72□□□□□ -1.65
CD44-235ENST00000532339 IL33O95760 270 aa4.72□□□□□ -1.65
CD44-235ENST00000532339 HNRNPCP07910 306 aaKnown RBP eCLIP4.72□□□□□ -1.65
CD44-235ENST00000532339 CELA2AP08217 269 aa4.72□□□□□ -1.65
CD44-235ENST00000532339 CT47B1P0C2W7 299 aaPredicted RBP4.72□□□□□ -1.65
CD44-235ENST00000532339 GOLGA6DP0CG33 693 aa4.72□□□□□ -1.65
CD44-235ENST00000532339 NDUFB7P17568 137 aa4.72□□□□□ -1.65
CD44-235ENST00000532339 MAP2K6P52564 334 aa4.72□□□□□ -1.65
CD44-235ENST00000532339 KRTAP10-11P60412 298 aa4.72□□□□□ -1.65
CD44-235ENST00000532339 LLGL1Q15334 1064 aa4.72□□□□□ -1.65
CD44-235ENST00000532339 PGS1Q32NB8 556 aa4.72□□□□□ -1.65
CD44-235ENST00000532339 GFOD2Q3B7J2 385 aa4.72□□□□□ -1.65
CD44-235ENST00000532339 ZNF618Q5T7W0 954 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms