RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 NRP1O14786 923 aa21.59■■□□□ 1.05
VPS28-209ENST00000528142 HSPA1AP0DMV8 641 aaKnown RBP21.59■■□□□ 1.05
VPS28-209ENST00000528142 HSPA1BP0DMV9 641 aaKnown RBP21.59■■□□□ 1.05
VPS28-209ENST00000528142 COL6A1P12109 1028 aa21.59■■□□□ 1.05
VPS28-209ENST00000528142 EIF3BP55884 814 aaKnown RBP21.59■■□□□ 1.05
VPS28-209ENST00000528142 BFSP2Q13515 415 aa21.59■■□□□ 1.05
VPS28-209ENST00000528142 DPYSL2Q16555 572 aa21.59■■□□□ 1.05
VPS28-209ENST00000528142 P3H1Q32P28 736 aa21.59■■□□□ 1.05
VPS28-209ENST00000528142 ANKRD20A8PQ5CZ79 823 aa21.59■■□□□ 1.05
VPS28-209ENST00000528142 UBAP2Q5T6F2 1119 aaKnown RBP21.59■■□□□ 1.05
VPS28-209ENST00000528142 OTUD1Q5VV17 481 aaPredicted RBP21.59■■□□□ 1.05
VPS28-209ENST00000528142 GPRIN1Q7Z2K8 1008 aa21.59■■□□□ 1.05
VPS28-209ENST00000528142 COLGALT2Q8IYK4 626 aa21.59■■□□□ 1.05
VPS28-209ENST00000528142 PQLC3Q8N755 202 aa21.59■■□□□ 1.05
VPS28-209ENST00000528142 OR10T2Q8NGX3 314 aa21.59■■□□□ 1.05
VPS28-209ENST00000528142 NPY6RQ99463 290 aa21.59■■□□□ 1.05
VPS28-209ENST00000528142 ZNF670Q9BS34 389 aa21.59■■□□□ 1.05
VPS28-209ENST00000528142 ULBP1Q9BZM6 244 aa21.59■■□□□ 1.05
VPS28-209ENST00000528142 TSPYL1Q9H0U9 437 aa21.59■■□□□ 1.05
VPS28-209ENST00000528142 TMLHEQ9NVH6 421 aa21.59■■□□□ 1.05
VPS28-209ENST00000528142 PSD3Q9NYI0 1048 aa21.59■■□□□ 1.05
VPS28-209ENST00000528142 SGK1O00141 431 aa21.58■■□□□ 1.05
VPS28-209ENST00000528142 DNALI1O14645 258 aaPredicted RBP21.58■■□□□ 1.05
VPS28-209ENST00000528142 L1CAMP32004 1257 aa21.58■■□□□ 1.05
VPS28-209ENST00000528142 NOS2P35228 1153 aa21.58■■□□□ 1.05
VPS28-209ENST00000528142 DAOAP59103 153 aa21.58■■□□□ 1.05
VPS28-209ENST00000528142 NOMO1Q15155 1222 aa21.58■■□□□ 1.05
VPS28-209ENST00000528142 OVOS1Q6IE37 1185 aa21.58■■□□□ 1.05
VPS28-209ENST00000528142 LRRTM3Q86VH5 581 aa21.58■■□□□ 1.05
VPS28-209ENST00000528142 PCDH19Q8TAB3 1148 aa21.58■■□□□ 1.05
VPS28-209ENST00000528142 FAM76AQ8TAV0 307 aa21.58■■□□□ 1.05
VPS28-209ENST00000528142 ATP6V1G3Q96LB4 118 aa21.58■■□□□ 1.05
VPS28-209ENST00000528142 C10orf88Q9H8K7 445 aa21.58■■□□□ 1.05
VPS28-209ENST00000528142 CNGB3Q9NQW8 809 aa21.58■■□□□ 1.05
VPS28-209ENST00000528142 TMEM161AQ9NX61 479 aa21.58■■□□□ 1.05
VPS28-209ENST00000528142 MTMR10Q9NXD2 777 aa21.58■■□□□ 1.05
VPS28-209ENST00000528142 KANSL3Q9P2N6 904 aa21.58■■□□□ 1.05
VPS28-209ENST00000528142 PCDHB8Q9UN66 801 aa21.58■■□□□ 1.05
VPS28-209ENST00000528142 ARHGEF37A1IGU5 675 aa21.57■■□□□ 1.04
VPS28-209ENST00000528142 TMEM189-UBE2V1I3L0A0 370 aa21.57■■□□□ 1.04
VPS28-209ENST00000528142 RIPK2O43353 540 aa21.57■■□□□ 1.04
VPS28-209ENST00000528142 FYNP06241 537 aa21.57■■□□□ 1.04
VPS28-209ENST00000528142 GDF10P55107 478 aa21.57■■□□□ 1.04
VPS28-209ENST00000528142 EIF3EP60228 445 aaKnown RBP21.57■■□□□ 1.04
VPS28-209ENST00000528142 SLC29A2Q14542 456 aa21.57■■□□□ 1.04
VPS28-209ENST00000528142 PLEKHG4Q58EX7 1191 aa21.57■■□□□ 1.04
VPS28-209ENST00000528142 DCAF6Q58WW2 860 aa21.57■■□□□ 1.04
VPS28-209ENST00000528142 SLC9A4Q6AI14 798 aa21.57■■□□□ 1.04
VPS28-209ENST00000528142 FBXO46Q6PJ61 603 aaPredicted RBP21.57■■□□□ 1.04
VPS28-209ENST00000528142 NPNTQ6UXI9 565 aa21.57■■□□□ 1.04
VPS28-209ENST00000528142 HFE2Q6ZVN8 426 aa21.57■■□□□ 1.04
VPS28-209ENST00000528142 TRMT10CQ7L0Y3 403 aaKnown RBP21.57■■□□□ 1.04
VPS28-209ENST00000528142 CCDC185Q8N715 623 aa21.57■■□□□ 1.04
VPS28-209ENST00000528142 PLD5Q8N7P1 536 aa21.57■■□□□ 1.04
VPS28-209ENST00000528142 URGCPQ8TCY9 931 aa21.57■■□□□ 1.04
VPS28-209ENST00000528142 TMEM209Q96SK2 561 aa21.57■■□□□ 1.04
VPS28-209ENST00000528142 RHOBTB2Q9BYZ6 727 aa21.57■■□□□ 1.04
VPS28-209ENST00000528142 LRRC4CQ9HCJ2 640 aa21.57■■□□□ 1.04
VPS28-209ENST00000528142 TBC1D13Q9NVG8 400 aa21.57■■□□□ 1.04
VPS28-209ENST00000528142 TSC2P49815 1807 aa21.57■■□□□ 1.04
VPS28-209ENST00000528142 TDRD15B5MCY1 1934 aaKnown RBP21.57■■□□□ 1.04
VPS28-209ENST00000528142 ENPP3O14638 875 aa21.57■■□□□ 1.04
VPS28-209ENST00000528142 SHBGP04278 402 aa21.57■■□□□ 1.04
VPS28-209ENST00000528142 MYZAPP0CAP1 466 aa21.57■■□□□ 1.04
VPS28-209ENST00000528142 SULT1E1P49888 294 aa21.57■■□□□ 1.04
VPS28-209ENST00000528142 PITX1P78337 314 aaPredicted RBP21.57■■□□□ 1.04
VPS28-209ENST00000528142 GPS1Q13098 491 aa21.57■■□□□ 1.04
VPS28-209ENST00000528142 SYPL2Q5VXT5 272 aa21.57■■□□□ 1.04
VPS28-209ENST00000528142 DENND2CQ68D51 928 aa21.57■■□□□ 1.04
VPS28-209ENST00000528142 KCTD16Q68DU8 428 aa21.57■■□□□ 1.04
VPS28-209ENST00000528142 CCDC25Q86WR0 208 aa21.57■■□□□ 1.04
VPS28-209ENST00000528142 THEM5Q8N1Q8 247 aa21.57■■□□□ 1.04
VPS28-209ENST00000528142 DBF4BQ8NFT6 615 aa21.57■■□□□ 1.04
VPS28-209ENST00000528142 CRISPLD2Q9H0B8 497 aa21.57■■□□□ 1.04
VPS28-209ENST00000528142 ELAC1Q9H777 363 aaKnown RBP21.57■■□□□ 1.04
VPS28-209ENST00000528142 POPDC2Q9HBU9 364 aa21.57■■□□□ 1.04
VPS28-209ENST00000528142 AP4E1Q9UPM8 1137 aa21.57■■□□□ 1.04
VPS28-209ENST00000528142 RBP3P10745 1247 aa21.56■■□□□ 1.04
VPS28-209ENST00000528142 UNC45BQ8IWX7 931 aa21.56■■□□□ 1.04
VPS28-209ENST00000528142 SH2D3CQ8N5H7 860 aa21.56■■□□□ 1.04
VPS28-209ENST00000528142 TRAF3IP1Q8TDR0 691 aaPredicted RBP21.56■■□□□ 1.04
VPS28-209ENST00000528142 P3H4Q92791 437 aa21.56■■□□□ 1.04
VPS28-209ENST00000528142 PWWP2AQ96N64 755 aa21.56■■□□□ 1.04
VPS28-209ENST00000528142 MAGEB5Q9BZ81 275 aa21.56■■□□□ 1.04
VPS28-209ENST00000528142 FOXP3Q9BZS1 431 aa21.56■■□□□ 1.04
VPS28-209ENST00000528142 CDC42EP4Q9H3Q1 356 aaKnown RBP21.56■■□□□ 1.04
VPS28-209ENST00000528142 ZKSCAN7Q9P0L1 754 aaPredicted RBP21.56■■□□□ 1.04
VPS28-209ENST00000528142 TPX2Q9ULW0 747 aaKnown RBP21.56■■□□□ 1.04
VPS28-209ENST00000528142 GOLGA6L10A6NI86 522 aa21.55■■□□□ 1.04
VPS28-209ENST00000528142 YJEFN3A6XGL0 299 aa21.55■■□□□ 1.04
VPS28-209ENST00000528142 HMGB1P1B2RPK0 211 aaPredicted RBP21.55■■□□□ 1.04
VPS28-209ENST00000528142 E7ENQ6 273 aa21.55■■□□□ 1.04
VPS28-209ENST00000528142 PITPNM1O00562 1244 aa21.55■■□□□ 1.04
VPS28-209ENST00000528142 APOL1O14791 398 aa21.55■■□□□ 1.04
VPS28-209ENST00000528142 MCF2LO15068 1137 aa21.55■■□□□ 1.04
VPS28-209ENST00000528142 IFNB1P01574 187 aa21.55■■□□□ 1.04
VPS28-209ENST00000528142 TGM2P21980 687 aa21.55■■□□□ 1.04
VPS28-209ENST00000528142 BHLHA9Q7RTU4 235 aa21.55■■□□□ 1.04
VPS28-209ENST00000528142 RELL1Q8IUW5 271 aa21.55■■□□□ 1.04
VPS28-209ENST00000528142 ZCCHC9Q8N567 271 aaKnown RBP21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms