RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 CNGA2Q16280 664 aa21.97■■□□□ 1.11
VPS28-203ENST00000524521 GAB4Q2WGN9 574 aa21.97■■□□□ 1.11
VPS28-203ENST00000524521 FBXO43Q4G163 708 aa21.97■■□□□ 1.11
VPS28-203ENST00000524521 LY6G5CQ5SRR4 150 aa21.97■■□□□ 1.11
VPS28-203ENST00000524521 PKN3Q6P5Z2 889 aa21.97■■□□□ 1.11
VPS28-203ENST00000524521 KLHDC10Q6PID8 442 aa21.97■■□□□ 1.11
VPS28-203ENST00000524521 HTR3DQ70Z44 454 aa21.97■■□□□ 1.11
VPS28-203ENST00000524521 ARHGAP18Q8N392 663 aa21.97■■□□□ 1.11
VPS28-203ENST00000524521 ZNF276Q8N554 614 aa21.97■■□□□ 1.11
VPS28-203ENST00000524521 GPT2Q8TD30 523 aa21.97■■□□□ 1.11
VPS28-203ENST00000524521 ULBP1Q9BZM6 244 aa21.97■■□□□ 1.11
VPS28-203ENST00000524521 THAP9Q9H5L6 903 aa21.97■■□□□ 1.11
VPS28-203ENST00000524521 SETSIPP0DME0 302 aa21.96■■□□□ 1.11
VPS28-203ENST00000524521 ADH5P11766 374 aa21.96■■□□□ 1.11
VPS28-203ENST00000524521 KRT5P13647 590 aa21.96■■□□□ 1.11
VPS28-203ENST00000524521 SLC9A1P19634 815 aa21.96■■□□□ 1.11
VPS28-203ENST00000524521 SLC6A11P48066 632 aa21.96■■□□□ 1.11
VPS28-203ENST00000524521 YWHAGP61981 247 aaKnown RBP eCLIP21.96■■□□□ 1.11
VPS28-203ENST00000524521 PM20D1Q6GTS8 502 aa21.96■■□□□ 1.11
VPS28-203ENST00000524521 GBP6Q6ZN66 633 aa21.96■■□□□ 1.11
VPS28-203ENST00000524521 MIB1Q86YT6 1006 aa21.96■■□□□ 1.11
VPS28-203ENST00000524521 FAM114A1Q8IWE2 563 aa21.96■■□□□ 1.11
VPS28-203ENST00000524521 NDRG1Q92597 394 aaKnown RBP21.96■■□□□ 1.11
VPS28-203ENST00000524521 EZH1Q92800 747 aaPredicted RBP21.96■■□□□ 1.11
VPS28-203ENST00000524521 CDK5RAP1Q96SZ6 601 aaKnown RBP21.96■■□□□ 1.11
VPS28-203ENST00000524521 ZSWIM1Q9BR11 485 aa21.96■■□□□ 1.11
VPS28-203ENST00000524521 LSM7Q9UK45 103 aaKnown RBP21.96■■□□□ 1.11
VPS28-203ENST00000524521 FANCMQ8IYD8 2048 aa21.96■■□□□ 1.11
VPS28-203ENST00000524521 MFAP3P55082 362 aa21.95■■□□□ 1.1
VPS28-203ENST00000524521 GAD2Q05329 585 aa21.95■■□□□ 1.1
VPS28-203ENST00000524521 ADIGQ0VDE8 80 aa21.95■■□□□ 1.1
VPS28-203ENST00000524521 EFEMP1Q12805 493 aa21.95■■□□□ 1.1
VPS28-203ENST00000524521 STILQ15468 1287 aa21.95■■□□□ 1.1
VPS28-203ENST00000524521 PKDCCQ504Y2 493 aa21.95■■□□□ 1.1
VPS28-203ENST00000524521 HSP90AA4PQ58FG1 418 aa21.95■■□□□ 1.1
VPS28-203ENST00000524521 HEATR6Q6AI08 1181 aaKnown RBP21.95■■□□□ 1.1
VPS28-203ENST00000524521 TRIM65Q6PJ69 517 aa21.95■■□□□ 1.1
VPS28-203ENST00000524521 RSRC2Q7L4I2 434 aaKnown RBP21.95■■□□□ 1.1
VPS28-203ENST00000524521 SPHK2Q9NRA0 654 aa21.95■■□□□ 1.1
VPS28-203ENST00000524521 RASAL2Q9UJF2 1139 aa21.95■■□□□ 1.1
VPS28-203ENST00000524521 WDR3Q9UNX4 943 aaKnown RBP eCLIP21.95■■□□□ 1.1
VPS28-203ENST00000524521 MYOFQ9NZM1 2061 aa21.95■■□□□ 1.1
VPS28-203ENST00000524521 CHURC1-FNTBB4DL54 471 aa21.94■■□□□ 1.1
VPS28-203ENST00000524521 K7ESF4 209 aa21.94■■□□□ 1.1
VPS28-203ENST00000524521 M0QYV0 167 aa21.94■■□□□ 1.1
VPS28-203ENST00000524521 GREM1O60565 184 aa21.94■■□□□ 1.1
VPS28-203ENST00000524521 LILRB5O75023 590 aa21.94■■□□□ 1.1
VPS28-203ENST00000524521 PAPSS2O95340 614 aaPredicted RBP21.94■■□□□ 1.1
VPS28-203ENST00000524521 LCP1P13796 627 aa21.94■■□□□ 1.1
VPS28-203ENST00000524521 FNTBP49356 437 aa21.94■■□□□ 1.1
VPS28-203ENST00000524521 RGS7P49802 495 aa21.94■■□□□ 1.1
VPS28-203ENST00000524521 ZNF132P52740 706 aa21.94■■□□□ 1.1
VPS28-203ENST00000524521 DMWDQ09019 674 aa21.94■■□□□ 1.1
VPS28-203ENST00000524521 EXOC3L4Q17RC7 722 aa21.94■■□□□ 1.1
VPS28-203ENST00000524521 ANO4Q32M45 955 aa21.94■■□□□ 1.1
VPS28-203ENST00000524521 BTBD8Q5XKL5 378 aa21.94■■□□□ 1.1
VPS28-203ENST00000524521 GJB7Q6PEY0 223 aa21.94■■□□□ 1.1
VPS28-203ENST00000524521 ENOSF1Q7L5Y1 443 aa21.94■■□□□ 1.1
VPS28-203ENST00000524521 TMEM25Q86YD3 366 aa21.94■■□□□ 1.1
VPS28-203ENST00000524521 SIX6OS1Q8N1H7 587 aa21.94■■□□□ 1.1
VPS28-203ENST00000524521 RPLP0P6Q8NHW5 317 aa21.94■■□□□ 1.1
VPS28-203ENST00000524521 KCTD13Q8WZ19 329 aa21.94■■□□□ 1.1
VPS28-203ENST00000524521 SECISBP2LQ93073 1101 aaKnown RBP21.94■■□□□ 1.1
VPS28-203ENST00000524521 PNKPQ96T60 521 aa21.94■■□□□ 1.1
VPS28-203ENST00000524521 SLC8A2Q9UPR5 921 aa21.94■■□□□ 1.1
VPS28-203ENST00000524521 CNTN6Q9UQ52 1028 aa21.94■■□□□ 1.1
VPS28-203ENST00000524521 HOXC13P31276 330 aa21.93■■□□□ 1.1
VPS28-203ENST00000524521 COG7P83436 770 aa21.93■■□□□ 1.1
VPS28-203ENST00000524521 APBA1Q02410 837 aa21.93■■□□□ 1.1
VPS28-203ENST00000524521 MAN2A1Q16706 1144 aa21.93■■□□□ 1.1
VPS28-203ENST00000524521 ARHGAP44Q17R89 818 aa21.93■■□□□ 1.1
VPS28-203ENST00000524521 CT47A1Q5JQC4 288 aaPredicted RBP21.93■■□□□ 1.1
VPS28-203ENST00000524521 PMF1Q6P1K2 205 aa21.93■■□□□ 1.1
VPS28-203ENST00000524521 C12orf40Q86WS4 652 aa21.93■■□□□ 1.1
VPS28-203ENST00000524521 NAT16Q8N8M0 369 aa21.93■■□□□ 1.1
VPS28-203ENST00000524521 SUMF1Q8NBK3 374 aa21.93■■□□□ 1.1
VPS28-203ENST00000524521 SLC35F5Q8WV83 523 aa21.93■■□□□ 1.1
VPS28-203ENST00000524521 FAM81BQ96LP2 452 aa21.93■■□□□ 1.1
VPS28-203ENST00000524521 POLR3BQ9NW08 1133 aaPredicted RBP21.93■■□□□ 1.1
VPS28-203ENST00000524521 GTPBP10A4D1E9 387 aaKnown RBP21.92■■□□□ 1.1
VPS28-203ENST00000524521 K7EQS6 105 aa21.92■■□□□ 1.1
VPS28-203ENST00000524521 PIK3R2O00459 728 aa21.92■■□□□ 1.1
VPS28-203ENST00000524521 STC2O76061 302 aa21.92■■□□□ 1.1
VPS28-203ENST00000524521 HMBSP08397 361 aa21.92■■□□□ 1.1
VPS28-203ENST00000524521 PRKCSHP14314 528 aaPredicted RBP21.92■■□□□ 1.1
VPS28-203ENST00000524521 PON1P27169 355 aa21.92■■□□□ 1.1
VPS28-203ENST00000524521 USP8P40818 1118 aa21.92■■□□□ 1.1
VPS28-203ENST00000524521 SEC13P55735 322 aa21.92■■□□□ 1.1
VPS28-203ENST00000524521 CCDC26Q8TAB7 109 aa21.92■■□□□ 1.1
VPS28-203ENST00000524521 TUBGCP2Q9BSJ2 902 aa21.92■■□□□ 1.1
VPS28-203ENST00000524521 SAMSN1Q9NSI8 373 aaKnown RBP21.92■■□□□ 1.1
VPS28-203ENST00000524521 MARCH2Q9P0N8 246 aa21.92■■□□□ 1.1
VPS28-203ENST00000524521 STRIP2Q9ULQ0 834 aa21.92■■□□□ 1.1
VPS28-203ENST00000524521 YJEFN3A6XGL0 299 aa21.91■■□□□ 1.1
VPS28-203ENST00000524521 E7ENQ6 273 aa21.91■■□□□ 1.1
VPS28-203ENST00000524521 LETM1O95202 739 aaPredicted RBP21.91■■□□□ 1.1
VPS28-203ENST00000524521 KAT7O95251 611 aa21.91■■□□□ 1.1
VPS28-203ENST00000524521 APODP05090 189 aa21.91■■□□□ 1.1
VPS28-203ENST00000524521 EIF2DP41214 584 aaKnown RBP21.91■■□□□ 1.1
VPS28-203ENST00000524521 KDSRQ06136 332 aa21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms