RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 TRIML2Q8N7C3 387 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 SHKBP1Q8TBC3 707 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 SERAC1Q96JX3 654 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 FOXP3Q9BZS1 431 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 VPS11Q9H270 941 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 TRAFD1O14545 582 aaPredicted RBP10.01□□□□□ -0.81
VCAN-210ENST00000513960 AVILO75366 819 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 DGKIO75912 1065 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 TMCC1O94876 653 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 PMLP29590 882 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 SP2Q02086 613 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 MSS51Q4VC12 460 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 PPP6R3Q5H9R7 873 aaPredicted RBP10.01□□□□□ -0.81
VCAN-210ENST00000513960 SPOCD1Q6ZMY3 1216 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 POLNQ7Z5Q5 900 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 ANKS1BQ7Z6G8 1248 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 DEFB107AQ8IZN7 70 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 NDUFAF2Q8N183 169 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 SLCO2A1Q92959 643 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 ALKBH8Q96BT7 664 aaKnown RBP10.01□□□□□ -0.81
VCAN-210ENST00000513960 CGRRF1Q99675 332 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 Q9H521 79 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 DHX33Q9H6R0 707 aaKnown RBP10.01□□□□□ -0.81
VCAN-210ENST00000513960 ADAMTS5Q9UNA0 930 aa10.01□□□□□ -0.81
VCAN-210ENST00000513960 TNS1Q9HBL0 1735 aaKnown RBP10□□□□□ -0.81
VCAN-210ENST00000513960 ALOX15BO15296 676 aa10□□□□□ -0.81
VCAN-210ENST00000513960 PSTPIP1O43586 416 aa10□□□□□ -0.81
VCAN-210ENST00000513960 PEX1O43933 1283 aa10□□□□□ -0.81
VCAN-210ENST00000513960 SORBS2O94875 1100 aaKnown RBP10□□□□□ -0.81
VCAN-210ENST00000513960 TCN1P20061 433 aaPredicted RBP10□□□□□ -0.81
VCAN-210ENST00000513960 PSMA2P25787 234 aa10□□□□□ -0.81
VCAN-210ENST00000513960 GPX6P59796 221 aa10□□□□□ -0.81
VCAN-210ENST00000513960 CLDN10P78369 228 aa10□□□□□ -0.81
VCAN-210ENST00000513960 CNTN2Q02246 1040 aa10□□□□□ -0.81
VCAN-210ENST00000513960 STX3Q13277 289 aa10□□□□□ -0.81
VCAN-210ENST00000513960 CYLC2Q14093 348 aaPredicted RBP10□□□□□ -0.81
VCAN-210ENST00000513960 KCTD21Q4G0X4 260 aa10□□□□□ -0.81
VCAN-210ENST00000513960 SEZ6Q53EL9 994 aa10□□□□□ -0.81
VCAN-210ENST00000513960 FAM160B1Q5W0V3 765 aa10□□□□□ -0.81
VCAN-210ENST00000513960 MON1BQ7L1V2 547 aa10□□□□□ -0.81
VCAN-210ENST00000513960 PPIL6Q8IXY8 311 aa10□□□□□ -0.81
VCAN-210ENST00000513960 RCOR2Q8IZ40 523 aa10□□□□□ -0.81
VCAN-210ENST00000513960 DNERQ8NFT8 737 aa10□□□□□ -0.81
VCAN-210ENST00000513960 EXD1Q8NHP7 514 aa10□□□□□ -0.81
VCAN-210ENST00000513960 ZNF398Q8TD17 642 aa10□□□□□ -0.81
VCAN-210ENST00000513960 APOPT1Q96IL0 206 aa10□□□□□ -0.81
VCAN-210ENST00000513960 VCPIP1Q96JH7 1222 aa10□□□□□ -0.81
VCAN-210ENST00000513960 MRPL1Q9BYD6 325 aaKnown RBP10□□□□□ -0.81
VCAN-210ENST00000513960 PARVAQ9NVD7 372 aa10□□□□□ -0.81
VCAN-210ENST00000513960 IL1RAPL1Q9NZN1 696 aa10□□□□□ -0.81
VCAN-210ENST00000513960 RABGEF1Q9UJ41 708 aa10□□□□□ -0.81
VCAN-210ENST00000513960 MAFBQ9Y5Q3 323 aaPredicted RBP10□□□□□ -0.81
VCAN-210ENST00000513960 STYXL1Q9Y6J8 313 aa10□□□□□ -0.81
VCAN-210ENST00000513960 C15orf38-AP3S2A0A0A6YYH1 394 aa10□□□□□ -0.81
VCAN-210ENST00000513960 SIGLEC16A6NMB1 481 aa10□□□□□ -0.81
VCAN-210ENST00000513960 SPDYE16A6NNV3 312 aaPredicted RBP10□□□□□ -0.81
VCAN-210ENST00000513960 MCF2LO15068 1137 aa10□□□□□ -0.81
VCAN-210ENST00000513960 LYPLA1O75608 230 aaPredicted RBP10□□□□□ -0.81
VCAN-210ENST00000513960 VNN1O95497 513 aa10□□□□□ -0.81
VCAN-210ENST00000513960 VCPP55072 806 aaKnown RBP10□□□□□ -0.81
VCAN-210ENST00000513960 NOMO3P69849 1222 aa10□□□□□ -0.81
VCAN-210ENST00000513960 CTC1Q2NKJ3 1217 aa10□□□□□ -0.81
VCAN-210ENST00000513960 TRIM67Q6ZTA4 783 aa10□□□□□ -0.81
VCAN-210ENST00000513960 ARPINQ7Z6K5 226 aa10□□□□□ -0.81
VCAN-210ENST00000513960 ZBTB33Q86T24 672 aa10□□□□□ -0.81
VCAN-210ENST00000513960 HOMEZQ8IX15 550 aa10□□□□□ -0.81
VCAN-210ENST00000513960 CCDC33Q8N5R6 958 aa10□□□□□ -0.81
VCAN-210ENST00000513960 CHST13Q8NET6 341 aa10□□□□□ -0.81
VCAN-210ENST00000513960 FEZF2Q8TBJ5 459 aa10□□□□□ -0.81
VCAN-210ENST00000513960 PPP4R1Q8TF05 950 aa10□□□□□ -0.81
VCAN-210ENST00000513960 EBF4Q9BQW3 602 aa10□□□□□ -0.81
VCAN-210ENST00000513960 SOX13Q9UN79 622 aa10□□□□□ -0.81
VCAN-210ENST00000513960 AIM2O14862 343 aa10□□□□□ -0.81
VCAN-210ENST00000513960 TM7SF2O76062 418 aa10□□□□□ -0.81
VCAN-210ENST00000513960 VCLP18206 1134 aa10□□□□□ -0.81
VCAN-210ENST00000513960 STAT5BP51692 787 aa10□□□□□ -0.81
VCAN-210ENST00000513960 WNT7BP56706 349 aa10□□□□□ -0.81
VCAN-210ENST00000513960 RPL10AP62906 217 aaKnown RBP10□□□□□ -0.81
VCAN-210ENST00000513960 MAMLD1Q13495 774 aa10□□□□□ -0.81
VCAN-210ENST00000513960 ZBTB41Q5SVQ8 909 aa10□□□□□ -0.81
VCAN-210ENST00000513960 C16orf46Q6P387 395 aa10□□□□□ -0.81
VCAN-210ENST00000513960 ZBTB46Q86UZ6 589 aa10□□□□□ -0.81
VCAN-210ENST00000513960 ALLCQ8N6M5 410 aa10□□□□□ -0.81
VCAN-210ENST00000513960 KCTD6Q8NC69 237 aa10□□□□□ -0.81
VCAN-210ENST00000513960 APOBEC3GQ9HC16 384 aaKnown RBP10□□□□□ -0.81
VCAN-210ENST00000513960 IP6K2Q9UHH9 426 aa10□□□□□ -0.81
VCAN-210ENST00000513960 MAGED2Q9UNF1 606 aaPredicted RBP10□□□□□ -0.81
VCAN-210ENST00000513960 DNAJC16Q9Y2G8 782 aa10□□□□□ -0.81
VCAN-210ENST00000513960 A0A0B4J269 797 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 MAGEB3O15480 346 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 ACO1P21399 889 aaKnown RBP9.99□□□□□ -0.81
VCAN-210ENST00000513960 KLRC2P26717 231 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 ARL2P36404 184 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 CHN2P52757 468 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 COPAP53621 1224 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 GDF10P55107 478 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 EIF3EP60228 445 aaKnown RBP9.99□□□□□ -0.81
VCAN-210ENST00000513960 TRPC3Q13507 836 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 CMPK2Q5EBM0 449 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 TXNRD3NBQ6F5E7 133 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms