RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 EDEM1Q92611 657 aa31.04■■■□□ 2.56
LIMCH1-211ENST00000509638 SLC22A12Q96S37 553 aa31.04■■■□□ 2.56
LIMCH1-211ENST00000509638 BAG1Q99933 345 aaPredicted RBP31.04■■■□□ 2.56
LIMCH1-211ENST00000509638 SLC46A2Q9BY10 475 aa31.04■■■□□ 2.56
LIMCH1-211ENST00000509638 USTQ9Y2C2 406 aa31.04■■■□□ 2.56
LIMCH1-211ENST00000509638 TRAV19A0A0A6YYK7 116 aa31.03■■■□□ 2.56
LIMCH1-211ENST00000509638 CCDC122Q5T0U0 273 aa31.03■■■□□ 2.56
LIMCH1-211ENST00000509638 BTBD8Q5XKL5 378 aa31.03■■■□□ 2.56
LIMCH1-211ENST00000509638 SLC26A9Q7LBE3 791 aa31.03■■■□□ 2.56
LIMCH1-211ENST00000509638 PHLDB2Q86SQ0 1253 aa31.03■■■□□ 2.56
LIMCH1-211ENST00000509638 ISCUQ9H1K1 167 aa31.03■■■□□ 2.56
LIMCH1-211ENST00000509638 ZMYM5Q9UJ78 669 aa31.03■■■□□ 2.56
LIMCH1-211ENST00000509638 TCF20Q9UGU0 1960 aaKnown RBP31.02■■■□□ 2.56
LIMCH1-211ENST00000509638 SOWAHDA6NJG2 315 aa31.02■■■□□ 2.56
LIMCH1-211ENST00000509638 COCHO43405 550 aa31.02■■■□□ 2.56
LIMCH1-211ENST00000509638 GRAP2O75791 330 aa31.02■■■□□ 2.56
LIMCH1-211ENST00000509638 CKMP06732 381 aa31.02■■■□□ 2.56
LIMCH1-211ENST00000509638 RALAP11233 206 aa31.02■■■□□ 2.56
LIMCH1-211ENST00000509638 RSRC2Q7L4I2 434 aaKnown RBP31.02■■■□□ 2.56
LIMCH1-211ENST00000509638 TMEM139Q8IV31 216 aa31.02■■■□□ 2.56
LIMCH1-211ENST00000509638 ZSCAN18Q8TBC5 510 aaPredicted RBP31.02■■■□□ 2.56
LIMCH1-211ENST00000509638 ACSF2Q96CM8 615 aaPredicted RBP31.02■■■□□ 2.56
LIMCH1-211ENST00000509638 RPGRIP1Q96KN7 1286 aa31.02■■■□□ 2.56
LIMCH1-211ENST00000509638 NACA2Q9H009 215 aa31.02■■■□□ 2.56
LIMCH1-211ENST00000509638 ABCC13Q9NSE7 274 aa31.02■■■□□ 2.56
LIMCH1-211ENST00000509638 NUDT5Q9UKK9 219 aa31.02■■■□□ 2.56
LIMCH1-211ENST00000509638 NR2E1Q9Y466 385 aa31.02■■■□□ 2.56
LIMCH1-211ENST00000509638 C2CD4DB7Z1M9 353 aa31.01■■■□□ 2.56
LIMCH1-211ENST00000509638 HSF2BPO75031 334 aa31.01■■■□□ 2.56
LIMCH1-211ENST00000509638 LAMP2P13473 410 aa31.01■■■□□ 2.56
LIMCH1-211ENST00000509638 GSCP56915 257 aaPredicted RBP31.01■■■□□ 2.56
LIMCH1-211ENST00000509638 EFHC1Q5JVL4 640 aa31.01■■■□□ 2.56
LIMCH1-211ENST00000509638 TMTC1Q8IUR5 882 aa31.01■■■□□ 2.56
LIMCH1-211ENST00000509638 CMTM8Q8IZV2 173 aa31.01■■■□□ 2.56
LIMCH1-211ENST00000509638 ARL14EPQ8N8R7 260 aaPredicted RBP31.01■■■□□ 2.56
LIMCH1-211ENST00000509638 CYP2S1Q96SQ9 504 aa31.01■■■□□ 2.56
LIMCH1-211ENST00000509638 ASNSD1Q9NWL6 643 aa31.01■■■□□ 2.56
LIMCH1-211ENST00000509638 WDR35Q9P2L0 1181 aa31.01■■■□□ 2.56
LIMCH1-211ENST00000509638 ZFP37Q9Y6Q3 630 aaPredicted RBP31.01■■■□□ 2.56
LIMCH1-211ENST00000509638 ATMINO43313 823 aaPredicted RBP31■■■□□ 2.55
LIMCH1-211ENST00000509638 OLFM2O95897 454 aa31■■■□□ 2.55
LIMCH1-211ENST00000509638 RRM1P23921 792 aa31■■■□□ 2.55
LIMCH1-211ENST00000509638 SCNN1AP37088 669 aa31■■■□□ 2.55
LIMCH1-211ENST00000509638 AVPR1AP37288 418 aa31■■■□□ 2.55
LIMCH1-211ENST00000509638 YWHAZP63104 245 aaKnown RBP31■■■□□ 2.55
LIMCH1-211ENST00000509638 ZNF268Q14587 947 aaPredicted RBP31■■■□□ 2.55
LIMCH1-211ENST00000509638 C10orf120Q5SQS8 335 aa31■■■□□ 2.55
LIMCH1-211ENST00000509638 ZNF653Q96CK0 615 aa31■■■□□ 2.55
LIMCH1-211ENST00000509638 VCPIP1Q96JH7 1222 aa31■■■□□ 2.55
LIMCH1-211ENST00000509638 PDLIM2Q96JY6 352 aa31■■■□□ 2.55
LIMCH1-211ENST00000509638 ASB2Q96Q27 587 aa31■■■□□ 2.55
LIMCH1-211ENST00000509638 CDK5RAP1Q96SZ6 601 aaKnown RBP31■■■□□ 2.55
LIMCH1-211ENST00000509638 TRIM62Q9BVG3 475 aa31■■■□□ 2.55
LIMCH1-211ENST00000509638 SMG9Q9H0W8 520 aaKnown RBP31■■■□□ 2.55
LIMCH1-211ENST00000509638 POPDC2Q9HBU9 364 aa31■■■□□ 2.55
LIMCH1-211ENST00000509638 METTL5Q9NRN9 209 aaKnown RBP31■■■□□ 2.55
LIMCH1-211ENST00000509638 EPS15L1Q9UBC2 864 aa31■■■□□ 2.55
LIMCH1-211ENST00000509638 SOBPA7XYQ1 873 aa31■■■□□ 2.55
LIMCH1-211ENST00000509638 PRAMEF12O95522 483 aa31■■■□□ 2.55
LIMCH1-211ENST00000509638 TBX18O95935 607 aa31■■■□□ 2.55
LIMCH1-211ENST00000509638 GLI1P08151 1106 aa31■■■□□ 2.55
LIMCH1-211ENST00000509638 PFKLP17858 780 aa31■■■□□ 2.55
LIMCH1-211ENST00000509638 HDCP19113 662 aa31■■■□□ 2.55
LIMCH1-211ENST00000509638 FAM78AQ5JUQ0 283 aa31■■■□□ 2.55
LIMCH1-211ENST00000509638 TADA2BQ86TJ2 420 aa31■■■□□ 2.55
LIMCH1-211ENST00000509638 CCDC170Q8IYT3 715 aa31■■■□□ 2.55
LIMCH1-211ENST00000509638 C3orf20Q8ND61 904 aa31■■■□□ 2.55
LIMCH1-211ENST00000509638 TRIM11Q96F44 468 aa31■■■□□ 2.55
LIMCH1-211ENST00000509638 ASB16Q96NS5 453 aa31■■■□□ 2.55
LIMCH1-211ENST00000509638 RNF38Q9H0F5 515 aa31■■■□□ 2.55
LIMCH1-211ENST00000509638 FYNP06241 537 aa30.99■■■□□ 2.55
LIMCH1-211ENST00000509638 NCAM1P13591 858 aa30.99■■■□□ 2.55
LIMCH1-211ENST00000509638 ABCB4P21439 1286 aa30.99■■■□□ 2.55
LIMCH1-211ENST00000509638 DNAJC24Q6P3W2 148 aa30.99■■■□□ 2.55
LIMCH1-211ENST00000509638 RNF139Q8WU17 664 aa30.99■■■□□ 2.55
LIMCH1-211ENST00000509638 MDM4O15151 490 aa30.98■■■□□ 2.55
LIMCH1-211ENST00000509638 DAB1O75553 588 aa30.98■■■□□ 2.55
LIMCH1-211ENST00000509638 CYLC1P35663 651 aaPredicted RBP30.98■■■□□ 2.55
LIMCH1-211ENST00000509638 MTF1Q14872 753 aa30.98■■■□□ 2.55
LIMCH1-211ENST00000509638 ST13P5Q8NFI4 369 aaPredicted RBP30.98■■■□□ 2.55
LIMCH1-211ENST00000509638 SMARCD2Q92925 531 aa30.98■■■□□ 2.55
LIMCH1-211ENST00000509638 KHSRPQ92945 711 aaKnown RBP eCLIP30.98■■■□□ 2.55
LIMCH1-211ENST00000509638 NAALADL1Q9UQQ1 740 aa30.98■■■□□ 2.55
LIMCH1-211ENST00000509638 CAPN9O14815 690 aa30.97■■■□□ 2.55
LIMCH1-211ENST00000509638 GJB6O95452 261 aa30.97■■■□□ 2.55
LIMCH1-211ENST00000509638 MBL2P11226 248 aaPredicted RBP30.97■■■□□ 2.55
LIMCH1-211ENST00000509638 ATP5C1P36542 298 aaKnown RBP30.97■■■□□ 2.55
LIMCH1-211ENST00000509638 RNASE9P60153 205 aaKnown RBP30.97■■■□□ 2.55
LIMCH1-211ENST00000509638 KLHDC10Q6PID8 442 aa30.97■■■□□ 2.55
LIMCH1-211ENST00000509638 ARID3BQ8IVW6 561 aaPredicted RBP30.97■■■□□ 2.55
LIMCH1-211ENST00000509638 ZNF276Q8N554 614 aa30.97■■■□□ 2.55
LIMCH1-211ENST00000509638 SLC2A13Q96QE2 648 aa30.97■■■□□ 2.55
LIMCH1-211ENST00000509638 OLA1Q9NTK5 396 aaKnown RBP30.97■■■□□ 2.55
LIMCH1-211ENST00000509638 SMPD4Q9NXE4 827 aa30.97■■■□□ 2.55
LIMCH1-211ENST00000509638 ZNF263O14978 683 aa30.96■■■□□ 2.55
LIMCH1-211ENST00000509638 MYBL1P10243 752 aa30.96■■■□□ 2.55
LIMCH1-211ENST00000509638 EFEMP1Q12805 493 aa30.96■■■□□ 2.55
LIMCH1-211ENST00000509638 RAD9BQ6WBX8 426 aa30.96■■■□□ 2.55
LIMCH1-211ENST00000509638 BEND5Q7L4P6 421 aa30.96■■■□□ 2.55
LIMCH1-211ENST00000509638 ADHFE1Q8IWW8 467 aa30.96■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms