RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 TMA16Q96EY4 203 aaKnown RBP7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 MRPS26Q9BYN8 205 aaKnown RBP7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 RNPEPQ9H4A4 650 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 WDR55Q9H6Y2 383 aaPredicted RBP7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 MAGEF1Q9HAY2 307 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 ZNF358Q9NW07 568 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 GIN1Q9NXP7 522 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 TMED5Q9Y3A6 229 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 SNX13Q9Y5W8 968 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 NR2E3Q9Y5X4 410 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 MYPNQ86TC9 1320 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 LRRC37A3O60309 1634 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 PCP4L1A6NKN8 68 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 LAD1O00515 517 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 MYO1DO94832 1006 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 DDX5P17844 614 aaKnown RBP7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 PSMC3P17980 439 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 ITGAXP20702 1163 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 ADCY7P51828 1080 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 COPAP53621 1224 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 ARPC4P59998 168 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 KRT72Q14CN4 511 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 PLCL1Q15111 1095 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 HIF1AQ16665 826 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 CYP1B1Q16678 543 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 TMEM119Q4V9L6 283 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 FAM117BQ6P1L5 589 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 MFSD7Q6UXD7 560 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 KIAA2013Q8IYS2 634 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 CADM3Q8N126 398 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 LZTR1Q8N653 840 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 SLC43A3Q8NBI5 491 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 ISOC1Q96CN7 298 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 CBWD1Q9BRT8 395 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 TRPV6Q9H1D0 765 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 UVRAGQ9P2Y5 699 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 DIS3Q9Y2L1 958 aaKnown RBP7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 FIS1Q9Y3D6 152 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 TLL2Q9Y6L7 1015 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 CEP350Q5VT06 3117 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 KIF13AQ9H1H9 1805 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 ARHGEF37A1IGU5 675 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 ANKRD34BA5PLL1 514 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 SAC3D1A6NKF1 404 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 A8MV72 311 aaPredicted RBP7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 MEN1O00255 615 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 IPO5O00410 1097 aaKnown RBP7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 CBFA2T3O75081 653 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 RNASEH2AO75792 299 aaKnown RBP7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 MT-ND1P03886 318 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 ALDH4A1P30038 563 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 PSMC2P35998 433 aaKnown RBP7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 ELK3P41970 407 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 STAT2P52630 851 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 THOP1P52888 689 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 RPL7AP62424 266 aaKnown RBP7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 FMO1Q01740 532 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 FLOT2Q14254 428 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 GRM4Q14833 912 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 SPDYAQ5MJ70 313 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 MAP3K21Q5TCX8 1036 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 SUSD4Q5VX71 490 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 TMEM198Q66K66 360 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 TTC30AQ86WT1 665 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 CRLF3Q8IUI8 442 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 SLC38A6Q8IZM9 456 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 ZCCHC9Q8N567 271 aaKnown RBP7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 TTLL6Q8N841 843 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 BPIFB6Q8NFQ5 453 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 NLRP7Q8WX94 980 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 RSPH1Q8WYR4 309 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 LRTOMTQ8WZ04 291 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 HTRA1Q92743 480 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 CEP95Q96GE4 821 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 FAR2Q96K12 515 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 RANBP9Q96S59 729 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 EIF2AQ9BY44 585 aaKnown RBP7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 TRIM39Q9HCM9 518 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 HACD3Q9P035 362 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 FBXO9Q9UK97 447 aaPredicted RBP7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 DNM3Q9UQ16 869 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 ZBTB1Q9Y2K1 713 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 A0A0C4DFX4 3053 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 SORBS3O60504 671 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 SIN3BO75182 1162 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 APOEP02649 317 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 INHBAP08476 426 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 ENDOUP21128 410 aaKnown RBP7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 GRIA3P42263 894 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 SLC12A3P55017 1021 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 RACK1P63244 317 aaKnown RBP7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 PIGFQ07326 219 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 BFSP1Q12934 665 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 MYBPC2Q14324 1141 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 ZNF394Q53GI3 561 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 IL23RQ5VWK5 629 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 BSPRYQ5W0U4 402 aa7.51□□□□□ -1.21
LIMCH1-207ENST00000508466 SCARA3Q6AZY7 606 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms