RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 CDO1Q16878 200 aa8.81□□□□□ -1
SF3A1-210ENST00000498259 MGAT5BQ3V5L5 792 aa8.81□□□□□ -1
SF3A1-210ENST00000498259 EFHC2Q5JST6 749 aa8.81□□□□□ -1
SF3A1-210ENST00000498259 BSPRYQ5W0U4 402 aa8.81□□□□□ -1
SF3A1-210ENST00000498259 LLGL2Q6P1M3 1020 aa8.81□□□□□ -1
SF3A1-210ENST00000498259 EMBQ6PCB8 327 aa8.81□□□□□ -1
SF3A1-210ENST00000498259 ELMSAN1Q6PJG2 1045 aa8.81□□□□□ -1
SF3A1-210ENST00000498259 C4orf22Q6V702 233 aa8.81□□□□□ -1
SF3A1-210ENST00000498259 DENND5BQ6ZUT9 1274 aa8.81□□□□□ -1
SF3A1-210ENST00000498259 RTL10Q7L3V2 364 aa8.81□□□□□ -1
SF3A1-210ENST00000498259 OTOP2Q7RTS6 562 aa8.81□□□□□ -1
SF3A1-210ENST00000498259 GSTA5Q7RTV2 222 aa8.81□□□□□ -1
SF3A1-210ENST00000498259 LRRTM3Q86VH5 581 aa8.81□□□□□ -1
SF3A1-210ENST00000498259 DEFB106AQ8N104 65 aa8.81□□□□□ -1
SF3A1-210ENST00000498259 SLC39A11Q8N1S5 342 aa8.81□□□□□ -1
SF3A1-210ENST00000498259 STKLD1Q8NE28 680 aa8.81□□□□□ -1
SF3A1-210ENST00000498259 ZNF461Q8TAF7 563 aa8.81□□□□□ -1
SF3A1-210ENST00000498259 RIN2Q8WYP3 895 aaPredicted RBP8.81□□□□□ -1
SF3A1-210ENST00000498259 OVCA2Q8WZ82 227 aa8.81□□□□□ -1
SF3A1-210ENST00000498259 HSPH1Q92598 858 aa8.81□□□□□ -1
SF3A1-210ENST00000498259 P3H4Q92791 437 aa8.81□□□□□ -1
SF3A1-210ENST00000498259 RNF34Q969K3 372 aa8.81□□□□□ -1
SF3A1-210ENST00000498259 NT5C3BQ969T7 300 aa8.81□□□□□ -1
SF3A1-210ENST00000498259 NPY6RQ99463 290 aa8.81□□□□□ -1
SF3A1-210ENST00000498259 ZNF670Q9BS34 389 aa8.81□□□□□ -1
SF3A1-210ENST00000498259 HERC2P3Q9BVR0 1158 aa8.81□□□□□ -1
SF3A1-210ENST00000498259 FAM204AQ9H8W3 233 aa8.81□□□□□ -1
SF3A1-210ENST00000498259 TLR8Q9NR97 1041 aaKnown RBP8.81□□□□□ -1
SF3A1-210ENST00000498259 CHST7Q9NS84 486 aa8.81□□□□□ -1
SF3A1-210ENST00000498259 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.81□□□□□ -1
SF3A1-210ENST00000498259 CLIC5Q9NZA1 410 aa8.81□□□□□ -1
SF3A1-210ENST00000498259 TJP2Q9UDY2 1190 aa8.81□□□□□ -1
SF3A1-210ENST00000498259 AFF4Q9UHB7 1163 aaKnown RBP8.81□□□□□ -1
SF3A1-210ENST00000498259 SCML2Q9UQR0 700 aa8.81□□□□□ -1
SF3A1-210ENST00000498259 DRG1Q9Y295 367 aaKnown RBP8.81□□□□□ -1
SF3A1-210ENST00000498259 NR2E3Q9Y5X4 410 aa8.81□□□□□ -1
SF3A1-210ENST00000498259 hCG_1818297A0A087WSY0 165 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 HHLA1C9JL84 531 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 H3BRJ5 948 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 TBC1D4O60343 1298 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 BEST1O76090 585 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 C1RP00736 705 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 CSH1P0DML2 217 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 CSH2P0DML3 217 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 ACRP10323 421 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 H2AFXP16104 143 aaPredicted RBP8.8□□□□□ -1
SF3A1-210ENST00000498259 TGM2P21980 687 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 YWHAQP27348 245 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 STIP1P31948 543 aaKnown RBP8.8□□□□□ -1
SF3A1-210ENST00000498259 COILP38432 576 aaPredicted RBP8.8□□□□□ -1
SF3A1-210ENST00000498259 CDKN2BP42772 138 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 MARCKSL1P49006 195 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 GATMP50440 423 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 SLC5A3P53794 718 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 EPHB4P54760 987 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 YWHAGP61981 247 aaKnown RBP eCLIP8.8□□□□□ -1
SF3A1-210ENST00000498259 HTRA4P83105 476 aaPredicted RBP8.8□□□□□ -1
SF3A1-210ENST00000498259 GUCY2DQ02846 1103 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 KLF1Q13351 362 aaPredicted RBP8.8□□□□□ -1
SF3A1-210ENST00000498259 BYSLQ13895 437 aaKnown RBP8.8□□□□□ -1
SF3A1-210ENST00000498259 DPYSL2Q16555 572 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 C15orf59Q2T9L4 293 aaPredicted RBP8.8□□□□□ -1
SF3A1-210ENST00000498259 BRMS1LQ5PSV4 323 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 BBS12Q6ZW61 710 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 HDXQ7Z353 690 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 ADAT2Q7Z6V5 191 aaKnown RBP8.8□□□□□ -1
SF3A1-210ENST00000498259 PCGF5Q86SE9 256 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 ITIH5Q86UX2 942 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 RFX6Q8HWS3 928 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 COLGALT1Q8NBJ5 622 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 ZMIZ2Q8NF64 920 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 SLC7A14Q8TBB6 771 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 HERVK_113Q902F9 699 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 BADQ92934 168 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 NTAN1Q96AB6 310 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 CCDC114Q96M63 670 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 SERPINB11Q96P15 392 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 SEPT5Q99719 369 aaPredicted RBP8.8□□□□□ -1
SF3A1-210ENST00000498259 LPIN3Q9BQK8 851 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 ERP44Q9BS26 406 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 C11orf84Q9BUA3 381 aaPredicted RBP8.8□□□□□ -1
SF3A1-210ENST00000498259 EMILIN2Q9BXX0 1053 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 DDX47Q9H0S4 455 aaKnown RBP8.8□□□□□ -1
SF3A1-210ENST00000498259 WDCPQ9H6R7 721 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 ANKZF1Q9H8Y5 726 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 EPB41L5Q9HCM4 733 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.8□□□□□ -1
SF3A1-210ENST00000498259 FNIP2Q9P278 1114 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 UXTQ9UBK9 157 aaPredicted RBP8.8□□□□□ -1
SF3A1-210ENST00000498259 MTRF1LQ9UGC7 380 aaKnown RBP8.8□□□□□ -1
SF3A1-210ENST00000498259 AMACRQ9UHK6 382 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 DPP7Q9UHL4 492 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 ZNF148Q9UQR1 794 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 LZTS1Q9Y250 596 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 RAD54BQ9Y620 910 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 CDY1Q9Y6F8 540 aa8.8□□□□□ -1
SF3A1-210ENST00000498259 MTMR11A4FU01 709 aa8.79□□□□□ -1
SF3A1-210ENST00000498259 CFAP69A5D8W1 941 aa8.79□□□□□ -1
SF3A1-210ENST00000498259 YJEFN3A6XGL0 299 aa8.79□□□□□ -1
SF3A1-210ENST00000498259 NT5C1B-RDH14C9J2C7 533 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms