RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 HSF5Q4G112 596 aaPredicted RBP14.4□□□□□ -0.1
COL6A3-211ENST00000491233 USP39Q53GS9 565 aaKnown RBP14.4□□□□□ -0.1
COL6A3-211ENST00000491233 EOGTQ5NDL2 527 aa14.4□□□□□ -0.1
COL6A3-211ENST00000491233 EMC10Q5UCC4 262 aa14.4□□□□□ -0.1
COL6A3-211ENST00000491233 BTBD8Q5XKL5 378 aa14.4□□□□□ -0.1
COL6A3-211ENST00000491233 PMS2CLQ68D20 193 aa14.4□□□□□ -0.1
COL6A3-211ENST00000491233 C11orf74Q86VG3 221 aa14.4□□□□□ -0.1
COL6A3-211ENST00000491233 SMYD4Q8IYR2 804 aaPredicted RBP14.4□□□□□ -0.1
COL6A3-211ENST00000491233 NAT16Q8N8M0 369 aa14.4□□□□□ -0.1
COL6A3-211ENST00000491233 CCDC150Q8NCX0 1101 aa14.4□□□□□ -0.1
COL6A3-211ENST00000491233 WHAMMQ8TF30 809 aa14.4□□□□□ -0.1
COL6A3-211ENST00000491233 NMUR1Q9HB89 426 aa14.4□□□□□ -0.1
COL6A3-211ENST00000491233 CYLDQ9NQC7 956 aa14.4□□□□□ -0.1
COL6A3-211ENST00000491233 SPHK2Q9NRA0 654 aa14.4□□□□□ -0.1
COL6A3-211ENST00000491233 OSER1Q9NX31 292 aa14.4□□□□□ -0.1
COL6A3-211ENST00000491233 SCML2Q9UQR0 700 aa14.4□□□□□ -0.1
COL6A3-211ENST00000491233 CEP192Q8TEP8 1941 aa14.4□□□□□ -0.1
COL6A3-211ENST00000491233 BCLAF3A2AJT9 711 aaKnown RBP14.39□□□□□ -0.11
COL6A3-211ENST00000491233 MDM4O15151 490 aa14.39□□□□□ -0.11
COL6A3-211ENST00000491233 ALDH1A2O94788 518 aa14.39□□□□□ -0.11
COL6A3-211ENST00000491233 TBX18O95935 607 aa14.39□□□□□ -0.11
COL6A3-211ENST00000491233 MXI1P50539 228 aa14.39□□□□□ -0.11
COL6A3-211ENST00000491233 EDRF1Q3B7T1 1238 aa14.39□□□□□ -0.11
COL6A3-211ENST00000491233 ZNF394Q53GI3 561 aa14.39□□□□□ -0.11
COL6A3-211ENST00000491233 C10orf76Q5T2E6 689 aa14.39□□□□□ -0.11
COL6A3-211ENST00000491233 STPG1Q5TH74 334 aa14.39□□□□□ -0.11
COL6A3-211ENST00000491233 KRT39Q6A163 491 aa14.39□□□□□ -0.11
COL6A3-211ENST00000491233 TMEM25Q86YD3 366 aa14.39□□□□□ -0.11
COL6A3-211ENST00000491233 TERB1Q8NA31 727 aa14.39□□□□□ -0.11
COL6A3-211ENST00000491233 DDX1Q92499 740 aaKnown RBP14.39□□□□□ -0.11
COL6A3-211ENST00000491233 EEF2KMTQ96G04 330 aa14.39□□□□□ -0.11
COL6A3-211ENST00000491233 EDEM2Q9BV94 578 aa14.39□□□□□ -0.11
COL6A3-211ENST00000491233 KLF16Q9BXK1 252 aaPredicted RBP14.39□□□□□ -0.11
COL6A3-211ENST00000491233 PNPLA8Q9NP80 782 aa14.39□□□□□ -0.11
COL6A3-211ENST00000491233 POLMQ9NP87 494 aaPredicted RBP14.39□□□□□ -0.11
COL6A3-211ENST00000491233 DEC1Q9P2X7 70 aa14.39□□□□□ -0.11
COL6A3-211ENST00000491233 LSM7Q9UK45 103 aaKnown RBP14.39□□□□□ -0.11
COL6A3-211ENST00000491233 PCDHA5Q9Y5H7 936 aa14.39□□□□□ -0.11
COL6A3-211ENST00000491233 A0A0A0MRY4 1105 aa14.38□□□□□ -0.11
COL6A3-211ENST00000491233 A0A1W2PQH9 124 aa14.38□□□□□ -0.11
COL6A3-211ENST00000491233 TRIM24O15164 1050 aa14.38□□□□□ -0.11
COL6A3-211ENST00000491233 GREM1O60565 184 aa14.38□□□□□ -0.11
COL6A3-211ENST00000491233 ADAM23O75077 832 aa14.38□□□□□ -0.11
COL6A3-211ENST00000491233 CAVIN2O95810 425 aa14.38□□□□□ -0.11
COL6A3-211ENST00000491233 EPB41P11171 864 aaKnown RBP14.38□□□□□ -0.11
COL6A3-211ENST00000491233 GTF2H1P32780 548 aa14.38□□□□□ -0.11
COL6A3-211ENST00000491233 ATP5C1P36542 298 aaKnown RBP14.38□□□□□ -0.11
COL6A3-211ENST00000491233 TNFRSF4P43489 277 aa14.38□□□□□ -0.11
COL6A3-211ENST00000491233 GOLGA8FQ08AF8 430 aa14.38□□□□□ -0.11
COL6A3-211ENST00000491233 GOLGA8DPQ0D2H9 430 aa14.38□□□□□ -0.11
COL6A3-211ENST00000491233 PNOCQ13519 176 aa14.38□□□□□ -0.11
COL6A3-211ENST00000491233 PPP1R26Q5T8A7 1209 aaPredicted RBP14.38□□□□□ -0.11
COL6A3-211ENST00000491233 GRAMD4Q6IC98 578 aa14.38□□□□□ -0.11
COL6A3-211ENST00000491233 HTR3DQ70Z44 454 aa14.38□□□□□ -0.11
COL6A3-211ENST00000491233 CYP2U1Q7Z449 544 aa14.38□□□□□ -0.11
COL6A3-211ENST00000491233 ZNF513Q8N8E2 541 aaPredicted RBP14.38□□□□□ -0.11
COL6A3-211ENST00000491233 OLIG1Q8TAK6 271 aa14.38□□□□□ -0.11
COL6A3-211ENST00000491233 SEMA4DQ92854 862 aa14.38□□□□□ -0.11
COL6A3-211ENST00000491233 CCDC34Q96HJ3 373 aa14.38□□□□□ -0.11
COL6A3-211ENST00000491233 CNTNAP3BQ96NU0 1288 aa14.38□□□□□ -0.11
COL6A3-211ENST00000491233 CNTNAP3Q9BZ76 1288 aa14.38□□□□□ -0.11
COL6A3-211ENST00000491233 DNAI2Q9GZS0 605 aa14.38□□□□□ -0.11
COL6A3-211ENST00000491233 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.38□□□□□ -0.11
COL6A3-211ENST00000491233 BCCIPQ9P287 314 aaKnown RBP eCLIP14.38□□□□□ -0.11
COL6A3-211ENST00000491233 NUDT5Q9UKK9 219 aa14.38□□□□□ -0.11
COL6A3-211ENST00000491233 CIZ1Q9ULV3 898 aaPredicted RBP14.38□□□□□ -0.11
COL6A3-211ENST00000491233 TCRBV21S2A2A0A5A6 115 aa14.37□□□□□ -0.11
COL6A3-211ENST00000491233 TBC1D3BA6NDS4 549 aa14.37□□□□□ -0.11
COL6A3-211ENST00000491233 NEDD8-MDP1E9PL57 170 aa14.37□□□□□ -0.11
COL6A3-211ENST00000491233 RARGP13631 454 aa14.37□□□□□ -0.11
COL6A3-211ENST00000491233 DHPSP49366 369 aaPredicted RBP14.37□□□□□ -0.11
COL6A3-211ENST00000491233 KIF11P52732 1056 aa14.37□□□□□ -0.11
COL6A3-211ENST00000491233 C10orf120Q5SQS8 335 aa14.37□□□□□ -0.11
COL6A3-211ENST00000491233 RNF43Q68DV7 783 aa14.37□□□□□ -0.11
COL6A3-211ENST00000491233 CCDC186Q7Z3E2 898 aa14.37□□□□□ -0.11
COL6A3-211ENST00000491233 FBXL13Q8NEE6 735 aa14.37□□□□□ -0.11
COL6A3-211ENST00000491233 HMGB4Q8WW32 186 aa14.37□□□□□ -0.11
COL6A3-211ENST00000491233 RLN3Q8WXF3 142 aa14.37□□□□□ -0.11
COL6A3-211ENST00000491233 SPACA7Q96KW9 195 aa14.37□□□□□ -0.11
COL6A3-211ENST00000491233 ARID3AQ99856 593 aa14.37□□□□□ -0.11
COL6A3-211ENST00000491233 BBS2Q9BXC9 721 aa14.37□□□□□ -0.11
COL6A3-211ENST00000491233 DUSP16Q9BY84 665 aa14.37□□□□□ -0.11
COL6A3-211ENST00000491233 DNAJC17Q9NVM6 304 aaKnown RBP14.37□□□□□ -0.11
COL6A3-211ENST00000491233 NAGPAQ9UK23 515 aa14.37□□□□□ -0.11
COL6A3-211ENST00000491233 TM4SF5O14894 197 aa14.36□□□□□ -0.11
COL6A3-211ENST00000491233 CETN3O15182 167 aa14.36□□□□□ -0.11
COL6A3-211ENST00000491233 CACNG3O60359 315 aa14.36□□□□□ -0.11
COL6A3-211ENST00000491233 TYRP14679 529 aa14.36□□□□□ -0.11
COL6A3-211ENST00000491233 P2RY2P41231 377 aa14.36□□□□□ -0.11
COL6A3-211ENST00000491233 PREPLQ4J6C6 727 aaPredicted RBP14.36□□□□□ -0.11
COL6A3-211ENST00000491233 DCAF17Q5H9S7 520 aaPredicted RBP14.36□□□□□ -0.11
COL6A3-211ENST00000491233 TCERG1LQ5VWI1 586 aa14.36□□□□□ -0.11
COL6A3-211ENST00000491233 EGFLAMQ63HQ2 1017 aa14.36□□□□□ -0.11
COL6A3-211ENST00000491233 KLHDC10Q6PID8 442 aa14.36□□□□□ -0.11
COL6A3-211ENST00000491233 TPGS1Q6ZTW0 290 aa14.36□□□□□ -0.11
COL6A3-211ENST00000491233 TRMT11Q7Z4G4 463 aaKnown RBP14.36□□□□□ -0.11
COL6A3-211ENST00000491233 SCD5Q86SK9 330 aa14.36□□□□□ -0.11
COL6A3-211ENST00000491233 PGBD3Q8N328 593 aa14.36□□□□□ -0.11
COL6A3-211ENST00000491233 HEXIM2Q96MH2 286 aaKnown RBP14.36□□□□□ -0.11
COL6A3-211ENST00000491233 CISHQ9NSE2 258 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms