RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 ABCA3Q99758 1704 aa13.71□□□□□ -0.21
HMGN1-216ENST00000486741 GLTPD2A6NH11 291 aa13.71□□□□□ -0.21
HMGN1-216ENST00000486741 C3orf70A6NLC5 250 aaPredicted RBP13.71□□□□□ -0.21
HMGN1-216ENST00000486741 ENO1P06733 434 aaKnown RBP13.71□□□□□ -0.21
HMGN1-216ENST00000486741 DUSP28Q4G0W2 176 aa13.71□□□□□ -0.21
HMGN1-216ENST00000486741 ITPRIPL1Q6GPH6 555 aa13.71□□□□□ -0.21
HMGN1-216ENST00000486741 CRELD2Q6UXH1 353 aaPredicted RBP13.71□□□□□ -0.21
HMGN1-216ENST00000486741 EIF1ADQ8N9N8 165 aaKnown RBP13.71□□□□□ -0.21
HMGN1-216ENST00000486741 PPTC7Q8NI37 304 aa13.71□□□□□ -0.21
HMGN1-216ENST00000486741 CCDC124Q96CT7 223 aaKnown RBP13.71□□□□□ -0.21
HMGN1-216ENST00000486741 SENP8Q96LD8 212 aa13.71□□□□□ -0.21
HMGN1-216ENST00000486741 ULBP1Q9BZM6 244 aa13.71□□□□□ -0.21
HMGN1-216ENST00000486741 APOBEC2Q9Y235 224 aaKnown RBP13.71□□□□□ -0.21
HMGN1-216ENST00000486741 NRCAMQ92823 1304 aa13.71□□□□□ -0.21
HMGN1-216ENST00000486741 GOLGA8TH3BQL2 631 aa13.71□□□□□ -0.22
HMGN1-216ENST00000486741 IGF2BP3O00425 579 aaKnown RBP eCLIP13.71□□□□□ -0.22
HMGN1-216ENST00000486741 CYP1A1P04798 512 aaPredicted RBP13.71□□□□□ -0.22
HMGN1-216ENST00000486741 CHI3L2Q15782 390 aa13.71□□□□□ -0.22
HMGN1-216ENST00000486741 QPCTQ16769 361 aa13.71□□□□□ -0.22
HMGN1-216ENST00000486741 FASTKD1Q53R41 847 aaKnown RBP13.71□□□□□ -0.22
HMGN1-216ENST00000486741 BBS5Q8N3I7 341 aa13.71□□□□□ -0.22
HMGN1-216ENST00000486741 ZCCHC9Q8N567 271 aaKnown RBP13.71□□□□□ -0.22
HMGN1-216ENST00000486741 ATPAF2Q8N5M1 289 aa13.71□□□□□ -0.22
HMGN1-216ENST00000486741 COLGALT1Q8NBJ5 622 aa13.71□□□□□ -0.22
HMGN1-216ENST00000486741 SGF29Q96ES7 293 aa13.71□□□□□ -0.22
HMGN1-216ENST00000486741 USH1CQ9Y6N9 552 aa13.71□□□□□ -0.22
HMGN1-216ENST00000486741 NEMP1O14524 444 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 TRUB2O95900 331 aaKnown RBP13.7□□□□□ -0.22
HMGN1-216ENST00000486741 APOEP02649 317 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 BDNFP23560 247 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 ELF1P32519 619 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 PTGIRP43119 386 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 ZNF143P52747 638 aaPredicted RBP13.7□□□□□ -0.22
HMGN1-216ENST00000486741 COG7P83436 770 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 LMNTD2Q8IXW0 634 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 TCP10LQ8TDR4 215 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 R3HDMLQ9H3Y0 253 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 IPO11Q9UI26 975 aaKnown RBP13.7□□□□□ -0.22
HMGN1-216ENST00000486741 CHUKO15111 745 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 MMP3P08254 477 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 HOXC6P09630 235 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 SCTRP47872 440 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 SLC12A1Q13621 1099 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 KBTBD12Q3ZCT8 623 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 NOL9Q5SY16 702 aaKnown RBP13.7□□□□□ -0.22
HMGN1-216ENST00000486741 MSL3Q8N5Y2 521 aaKnown RBP13.7□□□□□ -0.22
HMGN1-216ENST00000486741 ALLCQ8N6M5 410 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 ZC3H15Q8WU90 426 aaKnown RBP13.7□□□□□ -0.22
HMGN1-216ENST00000486741 GRAMD1AQ96CP6 724 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 ADRA1DP25100 572 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 FAAP100Q0VG06 881 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 PMF1Q6P1K2 205 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 SLC4A11Q8NBS3 891 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 N4BP2L2Q92802 583 aaPredicted RBP13.7□□□□□ -0.22
HMGN1-216ENST00000486741 TSPYL2Q9H2G4 693 aaPredicted RBP13.7□□□□□ -0.22
HMGN1-216ENST00000486741 ATXN3LQ9H3M9 355 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 GTSE1Q9NYZ3 720 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 GRHL1Q9NZI5 618 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 CNTNAP2Q9UHC6 1331 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 TSPAN1O60635 241 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 C22orf31O95567 290 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 MX2P20592 715 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 PRAMEP78395 509 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 STX3Q13277 289 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 SH3D19Q5HYK7 790 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 FBXO41Q8TF61 875 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 FAM161BQ96MY7 647 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 SH3GL2Q99962 352 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 HAO1Q9UJM8 370 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 SLC39A10Q9ULF5 831 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 CDY2AQ9Y6F7 541 aa13.7□□□□□ -0.22
HMGN1-216ENST00000486741 GPR182O15218 404 aa13.69□□□□□ -0.22
HMGN1-216ENST00000486741 CILPO75339 1184 aa13.69□□□□□ -0.22
HMGN1-216ENST00000486741 FCGRTP55899 365 aa13.69□□□□□ -0.22
HMGN1-216ENST00000486741 RIBC1Q8N443 379 aaPredicted RBP13.69□□□□□ -0.22
HMGN1-216ENST00000486741 DTX3LQ8TDB6 740 aa13.69□□□□□ -0.22
HMGN1-216ENST00000486741 USP6NLQ92738 828 aa13.69□□□□□ -0.22
HMGN1-216ENST00000486741 FAM136AQ96C01 138 aa13.69□□□□□ -0.22
HMGN1-216ENST00000486741 C12orf65Q9H3J6 166 aaKnown RBP13.69□□□□□ -0.22
HMGN1-216ENST00000486741 AKR1A1P14550 325 aa13.69□□□□□ -0.22
HMGN1-216ENST00000486741 BGNP21810 368 aa13.69□□□□□ -0.22
HMGN1-216ENST00000486741 HNRNPH1P31943 449 aaKnown RBP13.69□□□□□ -0.22
HMGN1-216ENST00000486741 RPA3P35244 121 aaPredicted RBP13.69□□□□□ -0.22
HMGN1-216ENST00000486741 MAP2K5Q13163 448 aa13.69□□□□□ -0.22
HMGN1-216ENST00000486741 BIRC2Q13490 618 aa13.69□□□□□ -0.22
HMGN1-216ENST00000486741 EFTUD2Q15029 972 aaKnown RBP eCLIP13.69□□□□□ -0.222e-22■■■■■ 48.1
HMGN1-216ENST00000486741 TTC39BQ5VTQ0 682 aaPredicted RBP13.69□□□□□ -0.22
HMGN1-216ENST00000486741 B3GNT9Q6UX72 402 aa13.69□□□□□ -0.22
HMGN1-216ENST00000486741 XYLT1Q86Y38 959 aa13.69□□□□□ -0.22
HMGN1-216ENST00000486741 MAML3Q96JK9 1138 aa13.69□□□□□ -0.22
HMGN1-216ENST00000486741 LGMNQ99538 433 aa13.69□□□□□ -0.22
HMGN1-216ENST00000486741 FZD8Q9H461 694 aa13.69□□□□□ -0.22
HMGN1-216ENST00000486741 DPEP3Q9H4B8 488 aa13.69□□□□□ -0.22
HMGN1-216ENST00000486741 CD248Q9HCU0 757 aa13.69□□□□□ -0.22
HMGN1-216ENST00000486741 SARS2Q9NP81 518 aaKnown RBP13.69□□□□□ -0.22
HMGN1-216ENST00000486741 NR2E3Q9Y5X4 410 aa13.69□□□□□ -0.22
HMGN1-216ENST00000486741 LOC100653049A0A140TA62 436 aa13.69□□□□□ -0.22
HMGN1-216ENST00000486741 KRT34O76011 436 aa13.69□□□□□ -0.22
HMGN1-216ENST00000486741 POLBP06746 335 aa13.69□□□□□ -0.22
HMGN1-216ENST00000486741 ATXN1P54253 815 aaKnown RBP13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms