RNA–Protein interactions for RNA: ENST00000480744.2

LIMS3-203, Transcript of LIM zinc finger domain containing 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LIMS3, Length 1,197 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-203ENST00000480744 ADRB1P08588 477 aa16.09■□□□□ 0.17
LIMS3-203ENST00000480744 BCKDHBP21953 392 aa16.09■□□□□ 0.17
LIMS3-203ENST00000480744 ATP5C1P36542 298 aaKnown RBP16.09■□□□□ 0.17
LIMS3-203ENST00000480744 TNFRSF4P43489 277 aa16.09■□□□□ 0.17
LIMS3-203ENST00000480744 LIMK1P53667 647 aa16.09■□□□□ 0.17
LIMS3-203ENST00000480744 GOLGA8FQ08AF8 430 aa16.09■□□□□ 0.17
LIMS3-203ENST00000480744 GOLGA8DPQ0D2H9 430 aa16.09■□□□□ 0.17
LIMS3-203ENST00000480744 ZNF394Q53GI3 561 aa16.09■□□□□ 0.17
LIMS3-203ENST00000480744 C11orf74Q86VG3 221 aa16.09■□□□□ 0.17
LIMS3-203ENST00000480744 TMEM25Q86YD3 366 aa16.09■□□□□ 0.17
LIMS3-203ENST00000480744 SMYD4Q8IYR2 804 aaPredicted RBP16.09■□□□□ 0.17
LIMS3-203ENST00000480744 PGBD3Q8N328 593 aa16.09■□□□□ 0.17
LIMS3-203ENST00000480744 DDX1Q92499 740 aaKnown RBP16.09■□□□□ 0.17
LIMS3-203ENST00000480744 EEF2KMTQ96G04 330 aa16.09■□□□□ 0.17
LIMS3-203ENST00000480744 CCDC34Q96HJ3 373 aa16.09■□□□□ 0.17
LIMS3-203ENST00000480744 CNTNAP3BQ96NU0 1288 aa16.09■□□□□ 0.17
LIMS3-203ENST00000480744 CNTNAP3Q9BZ76 1288 aa16.09■□□□□ 0.17
LIMS3-203ENST00000480744 DNAI2Q9GZS0 605 aa16.09■□□□□ 0.17
LIMS3-203ENST00000480744 TMEM8AQ9HCN3 771 aa16.09■□□□□ 0.17
LIMS3-203ENST00000480744 POLMQ9NP87 494 aaPredicted RBP16.09■□□□□ 0.17
LIMS3-203ENST00000480744 DEC1Q9P2X7 70 aa16.09■□□□□ 0.17
LIMS3-203ENST00000480744 NUDT5Q9UKK9 219 aa16.09■□□□□ 0.17
LIMS3-203ENST00000480744 SCML2Q9UQR0 700 aa16.09■□□□□ 0.17
LIMS3-203ENST00000480744 A0A1W2PQH9 124 aa16.08■□□□□ 0.16
LIMS3-203ENST00000480744 BCLAF3A2AJT9 711 aaKnown RBP16.08■□□□□ 0.16
LIMS3-203ENST00000480744 MDM4O15151 490 aa16.08■□□□□ 0.16
LIMS3-203ENST00000480744 HOXC11O43248 304 aaPredicted RBP16.08■□□□□ 0.16
LIMS3-203ENST00000480744 CILPO75339 1184 aa16.08■□□□□ 0.16
LIMS3-203ENST00000480744 KIR2DL1P43626 348 aaPredicted RBP16.08■□□□□ 0.16
LIMS3-203ENST00000480744 DHPSP49366 369 aaPredicted RBP16.08■□□□□ 0.16
LIMS3-203ENST00000480744 HSF5Q4G112 596 aaPredicted RBP16.08■□□□□ 0.16
LIMS3-203ENST00000480744 C10orf76Q5T2E6 689 aa16.08■□□□□ 0.16
LIMS3-203ENST00000480744 PMS2CLQ68D20 193 aa16.08■□□□□ 0.16
LIMS3-203ENST00000480744 RNF43Q68DV7 783 aa16.08■□□□□ 0.16
LIMS3-203ENST00000480744 ETFBKMTQ8IXQ9 262 aa16.08■□□□□ 0.16
LIMS3-203ENST00000480744 PHTF2Q8N3S3 785 aa16.08■□□□□ 0.16
LIMS3-203ENST00000480744 WHAMMQ8TF30 809 aa16.08■□□□□ 0.16
LIMS3-203ENST00000480744 HMGB4Q8WW32 186 aa16.08■□□□□ 0.16
LIMS3-203ENST00000480744 RLN3Q8WXF3 142 aa16.08■□□□□ 0.16
LIMS3-203ENST00000480744 KLF16Q9BXK1 252 aaPredicted RBP16.08■□□□□ 0.16
LIMS3-203ENST00000480744 NMUR1Q9HB89 426 aa16.08■□□□□ 0.16
LIMS3-203ENST00000480744 OSER1Q9NX31 292 aa16.08■□□□□ 0.16
LIMS3-203ENST00000480744 LSM7Q9UK45 103 aaKnown RBP16.08■□□□□ 0.16
LIMS3-203ENST00000480744 PCDHA5Q9Y5H7 936 aa16.08■□□□□ 0.16
LIMS3-203ENST00000480744 TNRC6BQ9UPQ9 1833 aaKnown RBP16.08■□□□□ 0.16
LIMS3-203ENST00000480744 A0A0A0MRY4 1105 aa16.07■□□□□ 0.16
LIMS3-203ENST00000480744 TCRBV21S2A2A0A5A6 115 aa16.07■□□□□ 0.16
LIMS3-203ENST00000480744 HHLA1C9JL84 531 aa16.07■□□□□ 0.16
LIMS3-203ENST00000480744 NEDD8-MDP1E9PL57 170 aa16.07■□□□□ 0.16
LIMS3-203ENST00000480744 MAP3K13O43283 966 aa16.07■□□□□ 0.16
LIMS3-203ENST00000480744 EPB41P11171 864 aaKnown RBP16.07■□□□□ 0.16
LIMS3-203ENST00000480744 RARGP13631 454 aa16.07■□□□□ 0.16
LIMS3-203ENST00000480744 MXI1P50539 228 aa16.07■□□□□ 0.16
LIMS3-203ENST00000480744 PNOCQ13519 176 aa16.07■□□□□ 0.16
LIMS3-203ENST00000480744 PREPLQ4J6C6 727 aaPredicted RBP16.07■□□□□ 0.16
LIMS3-203ENST00000480744 ZCWPW2Q504Y3 356 aa16.07■□□□□ 0.16
LIMS3-203ENST00000480744 C10orf120Q5SQS8 335 aa16.07■□□□□ 0.16
LIMS3-203ENST00000480744 KRT39Q6A163 491 aa16.07■□□□□ 0.16
LIMS3-203ENST00000480744 GRAMD4Q6IC98 578 aa16.07■□□□□ 0.16
LIMS3-203ENST00000480744 TPGS1Q6ZTW0 290 aa16.07■□□□□ 0.16
LIMS3-203ENST00000480744 NUDT18Q6ZVK8 323 aa16.07■□□□□ 0.16
LIMS3-203ENST00000480744 CYP2U1Q7Z449 544 aa16.07■□□□□ 0.16
LIMS3-203ENST00000480744 ZNF513Q8N8E2 541 aaPredicted RBP16.07■□□□□ 0.16
LIMS3-203ENST00000480744 SPACA7Q96KW9 195 aa16.07■□□□□ 0.16
LIMS3-203ENST00000480744 EDEM2Q9BV94 578 aa16.07■□□□□ 0.16
LIMS3-203ENST00000480744 BBS2Q9BXC9 721 aa16.07■□□□□ 0.16
LIMS3-203ENST00000480744 CYLDQ9NQC7 956 aa16.07■□□□□ 0.16
LIMS3-203ENST00000480744 DNAJC17Q9NVM6 304 aaKnown RBP16.07■□□□□ 0.16
LIMS3-203ENST00000480744 NAGPAQ9UK23 515 aa16.07■□□□□ 0.16
LIMS3-203ENST00000480744 TPRP12270 2363 aaKnown RBP16.07■□□□□ 0.16
LIMS3-203ENST00000480744 PI4KAP42356 2102 aa16.06■□□□□ 0.16
LIMS3-203ENST00000480744 TRIM24O15164 1050 aa16.06■□□□□ 0.16
LIMS3-203ENST00000480744 CETN3O15182 167 aa16.06■□□□□ 0.16
LIMS3-203ENST00000480744 ADAM23O75077 832 aa16.06■□□□□ 0.16
LIMS3-203ENST00000480744 CHRM1P11229 460 aaPredicted RBP16.06■□□□□ 0.16
LIMS3-203ENST00000480744 GTF2H1P32780 548 aa16.06■□□□□ 0.16
LIMS3-203ENST00000480744 WASP42768 502 aa16.06■□□□□ 0.16
LIMS3-203ENST00000480744 ENPEPQ07075 957 aa16.06■□□□□ 0.16
LIMS3-203ENST00000480744 EDRF1Q3B7T1 1238 aa16.06■□□□□ 0.16
LIMS3-203ENST00000480744 PPP1R26Q5T8A7 1209 aaPredicted RBP16.06■□□□□ 0.16
LIMS3-203ENST00000480744 HTR3DQ70Z44 454 aa16.06■□□□□ 0.16
LIMS3-203ENST00000480744 ARMCX6Q7L4S7 300 aa16.06■□□□□ 0.16
LIMS3-203ENST00000480744 TERB1Q8NA31 727 aa16.06■□□□□ 0.16
LIMS3-203ENST00000480744 SEMA4DQ92854 862 aa16.06■□□□□ 0.16
LIMS3-203ENST00000480744 HEXIM2Q96MH2 286 aaKnown RBP16.06■□□□□ 0.16
LIMS3-203ENST00000480744 DUSP9Q99956 384 aaKnown RBP16.06■□□□□ 0.16
LIMS3-203ENST00000480744 DUSP16Q9BY84 665 aa16.06■□□□□ 0.16
LIMS3-203ENST00000480744 PNPLA8Q9NP80 782 aa16.06■□□□□ 0.16
LIMS3-203ENST00000480744 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.06■□□□□ 0.16
LIMS3-203ENST00000480744 STX10O60499 249 aa16.05■□□□□ 0.16
LIMS3-203ENST00000480744 GREM1O60565 184 aa16.05■□□□□ 0.16
LIMS3-203ENST00000480744 TYRP14679 529 aa16.05■□□□□ 0.16
LIMS3-203ENST00000480744 P2RY2P41231 377 aa16.05■□□□□ 0.16
LIMS3-203ENST00000480744 KIF11P52732 1056 aa16.05■□□□□ 0.16
LIMS3-203ENST00000480744 DCAF17Q5H9S7 520 aaPredicted RBP16.05■□□□□ 0.16
LIMS3-203ENST00000480744 TCERG1LQ5VWI1 586 aa16.05■□□□□ 0.16
LIMS3-203ENST00000480744 LPCAT2Q7L5N7 544 aa16.05■□□□□ 0.16
LIMS3-203ENST00000480744 TRMT11Q7Z4G4 463 aaKnown RBP16.05■□□□□ 0.16
LIMS3-203ENST00000480744 MIB1Q86YT6 1006 aa16.05■□□□□ 0.16
LIMS3-203ENST00000480744 FRMD1Q8N878 549 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms