RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 SULT1E1P49888 294 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 ZNF662Q6ZS27 426 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 RBM46Q8TBY0 533 aaKnown RBP13.69□□□□□ -0.22
COL6A3-209ENST00000472056 CHCHD6Q9BRQ6 235 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 PNPLA3Q9NST1 481 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 PRKAG2Q9UGJ0 569 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 EFR3BQ9Y2G0 817 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 PAICSP22234 425 aaKnown RBP13.69□□□□□ -0.22
COL6A3-209ENST00000472056 ACAP1Q15027 740 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 TTC23Q5W5X9 447 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 PRR23CQ6ZRP0 262 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 ARMCX6Q7L4S7 300 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 DHFR2Q86XF0 187 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 CDK20Q8IZL9 346 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 REPS1Q96D71 796 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 NSMCE2Q96MF7 247 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 PHF20Q9BVI0 1012 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 RMI1Q9H9A7 625 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 AK5Q9Y6K8 562 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 SLC16A4O15374 487 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 MDH1BQ5I0G3 518 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 SIRT2Q8IXJ6 389 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 DEPDC4Q8N2C3 294 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 ATXN7L3BQ96GX2 97 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 COMMD9Q9P000 198 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 DMTF1Q9Y222 760 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 URB1O60287 2271 aaKnown RBP13.69□□□□□ -0.22
COL6A3-209ENST00000472056 AQP5P55064 265 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 COPZ1P61923 177 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 PUDPQ08623 228 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 TRAP1Q12931 704 aaKnown RBP13.69□□□□□ -0.22
COL6A3-209ENST00000472056 TNFAIP8L3Q5GJ75 292 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 TSHZ1Q6ZSZ6 1077 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 SLC7A14Q8TBB6 771 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 ANKRD49Q8WVL7 239 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 NIF3L1Q9GZT8 377 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 ZDHHC9Q9Y397 364 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 RASA1P20936 1047 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 ATP6V1C1P21283 382 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 FXR1P51114 621 aaKnown RBP eCLIP13.69□□□□□ -0.22
COL6A3-209ENST00000472056 CCNG1P51959 295 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 OSTNP61366 133 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 LGALS3BPQ08380 585 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 SF3B3Q15393 1217 aaKnown RBP13.69□□□□□ -0.22
COL6A3-209ENST00000472056 UBE2SQ16763 222 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 XKR3Q5GH77 459 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 TCHHL1Q5QJ38 904 aaPredicted RBP13.69□□□□□ -0.22
COL6A3-209ENST00000472056 TMEM132CQ8N3T6 1108 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 MYL12BO14950 172 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 ALADP13716 330 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 TCN1P20061 433 aaPredicted RBP13.69□□□□□ -0.22
COL6A3-209ENST00000472056 CHI3L1P36222 383 aaPredicted RBP13.69□□□□□ -0.22
COL6A3-209ENST00000472056 SERPINB5P36952 375 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 RPS6P62753 249 aaKnown RBP13.69□□□□□ -0.22
COL6A3-209ENST00000472056 RPL19P84098 196 aaKnown RBP13.69□□□□□ -0.22
COL6A3-209ENST00000472056 DEFB107AQ8IZN7 70 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 SNIP1Q8TAD8 396 aaKnown RBP13.69□□□□□ -0.22
COL6A3-209ENST00000472056 APOPT1Q96IL0 206 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 GORASP1Q9BQQ3 440 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 TMEM120AQ9BXJ8 343 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 NEDD4P46934 1319 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 TCP10L2B9ZVM9 353 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 GRK3P35626 688 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 BTKQ06187 659 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 ZNF846Q147U1 533 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 RBM20Q5T481 1227 aaKnown RBP13.69□□□□□ -0.22
COL6A3-209ENST00000472056 GRTP1Q5TC63 336 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 MOXD1Q6UVY6 613 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 FAM92BQ6ZTR7 304 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 CASKIN2Q8WXE0 1202 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 A1CFQ9NQ94 594 aaKnown RBP13.69□□□□□ -0.22
COL6A3-209ENST00000472056 ANKEF1Q9NU02 776 aa13.69□□□□□ -0.22
COL6A3-209ENST00000472056 TSC22D2O75157 780 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 CRTAMO95727 393 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 TSHRP16473 764 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 SCNN1DP51172 638 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 USPL1Q5W0Q7 1092 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 PDPK2PQ6A1A2 396 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 DHRSXQ8N5I4 330 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 MINDY2Q8NBR6 621 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 PHF11Q9UIL8 331 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 R3HDM2Q9Y2K5 976 aaKnown RBP13.68□□□□□ -0.22
COL6A3-209ENST00000472056 S100A6P06703 90 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 PRR29P0C7W0 189 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 TCF4P15884 667 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 CRKLP46109 303 aaKnown RBP13.68□□□□□ -0.22
COL6A3-209ENST00000472056 TMEM117Q9H0C3 514 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 ALG13Q9NP73 1137 aaKnown RBP13.68□□□□□ -0.22
COL6A3-209ENST00000472056 RAPGEFL1Q9UHV5 662 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 SLC39A10Q9ULF5 831 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 DISP1Q96F81 1524 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 MROH7-TTC4A0A0A0MT08 1334 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 UBDO15205 165 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 VCLP18206 1134 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 TRAF2Q12933 501 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 ARCQ7LC44 396 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 FUKQ8N0W3 1084 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.68□□□□□ -0.22
COL6A3-209ENST00000472056 TMEM216Q9P0N5 145 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 C3orf18Q9UK00 162 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms