RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 WBP2Q969T9 261 aa17.49■□□□□ 0.39
CCDC28B-204ENST00000469003 JAKMIP2Q96AA8 810 aa17.49■□□□□ 0.39
CCDC28B-204ENST00000469003 FAXDC2Q96IV6 333 aa17.49■□□□□ 0.39
CCDC28B-204ENST00000469003 KLF16Q9BXK1 252 aaPredicted RBP17.49■□□□□ 0.39
CCDC28B-204ENST00000469003 ZFHX4Q86UP3 3567 aa17.49■□□□□ 0.39
CCDC28B-204ENST00000469003 CETN3O15182 167 aa17.48■□□□□ 0.39
CCDC28B-204ENST00000469003 CYP26A1O43174 497 aa17.48■□□□□ 0.39
CCDC28B-204ENST00000469003 STX10O60499 249 aa17.48■□□□□ 0.39
CCDC28B-204ENST00000469003 ADRB1P08588 477 aa17.48■□□□□ 0.39
CCDC28B-204ENST00000469003 EPB41P11171 864 aaKnown RBP17.48■□□□□ 0.39
CCDC28B-204ENST00000469003 ACO1P21399 889 aaKnown RBP17.48■□□□□ 0.39
CCDC28B-204ENST00000469003 ATP5C1P36542 298 aaKnown RBP17.48■□□□□ 0.39
CCDC28B-204ENST00000469003 KIR2DL1P43626 348 aaPredicted RBP17.48■□□□□ 0.39
CCDC28B-204ENST00000469003 MXI1P50539 228 aa17.48■□□□□ 0.39
CCDC28B-204ENST00000469003 GOLGA8FQ08AF8 430 aa17.48■□□□□ 0.39
CCDC28B-204ENST00000469003 GOLGA8DPQ0D2H9 430 aa17.48■□□□□ 0.39
CCDC28B-204ENST00000469003 PNOCQ13519 176 aa17.48■□□□□ 0.39
CCDC28B-204ENST00000469003 PREPLQ4J6C6 727 aaPredicted RBP17.48■□□□□ 0.39
CCDC28B-204ENST00000469003 EOGTQ5NDL2 527 aa17.48■□□□□ 0.39
CCDC28B-204ENST00000469003 ANO7Q6IWH7 933 aa17.48■□□□□ 0.39
CCDC28B-204ENST00000469003 TMEM92Q6UXU6 159 aa17.48■□□□□ 0.39
CCDC28B-204ENST00000469003 FMR1NBQ8N0W7 255 aaPredicted RBP17.48■□□□□ 0.39
CCDC28B-204ENST00000469003 TTC39CQ8N584 583 aa17.48■□□□□ 0.39
CCDC28B-204ENST00000469003 TXNDC5Q8NBS9 432 aaKnown RBP17.48■□□□□ 0.39
CCDC28B-204ENST00000469003 FBXL13Q8NEE6 735 aa17.48■□□□□ 0.39
CCDC28B-204ENST00000469003 SEMA4DQ92854 862 aa17.48■□□□□ 0.39
CCDC28B-204ENST00000469003 TPSD1Q9BZJ3 242 aa17.48■□□□□ 0.39
CCDC28B-204ENST00000469003 VPS45Q9NRW7 570 aa17.48■□□□□ 0.39
CCDC28B-204ENST00000469003 RMND1Q9NWS8 449 aa17.48■□□□□ 0.39
CCDC28B-204ENST00000469003 OSER1Q9NX31 292 aa17.48■□□□□ 0.39
CCDC28B-204ENST00000469003 SGK1O00141 431 aa17.47■□□□□ 0.39
CCDC28B-204ENST00000469003 GREM1O60565 184 aa17.47■□□□□ 0.39
CCDC28B-204ENST00000469003 TULP3O75386 442 aa17.47■□□□□ 0.39
CCDC28B-204ENST00000469003 ALDH1A2O94788 518 aa17.47■□□□□ 0.39
CCDC28B-204ENST00000469003 TBX18O95935 607 aa17.47■□□□□ 0.39
CCDC28B-204ENST00000469003 HNRNPLP14866 589 aaKnown RBP eCLIP17.47■□□□□ 0.39
CCDC28B-204ENST00000469003 GBP1P32455 592 aa17.47■□□□□ 0.39
CCDC28B-204ENST00000469003 KIF11P52732 1056 aa17.47■□□□□ 0.39
CCDC28B-204ENST00000469003 ANO4Q32M45 955 aa17.47■□□□□ 0.39
CCDC28B-204ENST00000469003 COBLL1Q53SF7 1204 aa17.47■□□□□ 0.39
CCDC28B-204ENST00000469003 PPP1R26Q5T8A7 1209 aaPredicted RBP17.47■□□□□ 0.39
CCDC28B-204ENST00000469003 EMC10Q5UCC4 262 aa17.47■□□□□ 0.39
CCDC28B-204ENST00000469003 KLHDC10Q6PID8 442 aa17.47■□□□□ 0.39
CCDC28B-204ENST00000469003 TMEM25Q86YD3 366 aa17.47■□□□□ 0.39
CCDC28B-204ENST00000469003 NAT16Q8N8M0 369 aa17.47■□□□□ 0.39
CCDC28B-204ENST00000469003 MDGA1Q8NFP4 955 aa17.47■□□□□ 0.39
CCDC28B-204ENST00000469003 EEF2KMTQ96G04 330 aa17.47■□□□□ 0.39
CCDC28B-204ENST00000469003 DUSP16Q9BY84 665 aa17.47■□□□□ 0.39
CCDC28B-204ENST00000469003 NMUR1Q9HB89 426 aa17.47■□□□□ 0.39
CCDC28B-204ENST00000469003 POLMQ9NP87 494 aaPredicted RBP17.47■□□□□ 0.39
CCDC28B-204ENST00000469003 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.47■□□□□ 0.39
CCDC28B-204ENST00000469003 RAB20Q9NX57 234 aa17.47■□□□□ 0.39
CCDC28B-204ENST00000469003 DEC1Q9P2X7 70 aa17.47■□□□□ 0.39
CCDC28B-204ENST00000469003 LSM7Q9UK45 103 aaKnown RBP17.47■□□□□ 0.39
CCDC28B-204ENST00000469003 INVSQ9Y283 1065 aa17.47■□□□□ 0.39
CCDC28B-204ENST00000469003 CNOT1A5YKK6 2376 aaKnown RBP17.47■□□□□ 0.39
CCDC28B-204ENST00000469003 A0A1W2PQH9 124 aa17.46■□□□□ 0.39
CCDC28B-204ENST00000469003 TBC1D3BA6NDS4 549 aa17.46■□□□□ 0.39
CCDC28B-204ENST00000469003 RARGP13631 454 aa17.46■□□□□ 0.39
CCDC28B-204ENST00000469003 PRCPP42785 496 aa17.46■□□□□ 0.39
CCDC28B-204ENST00000469003 PSEN1P49768 467 aa17.46■□□□□ 0.39
CCDC28B-204ENST00000469003 ZNF394Q53GI3 561 aa17.46■□□□□ 0.39
CCDC28B-204ENST00000469003 PPM1JQ5JR12 505 aa17.46■□□□□ 0.39
CCDC28B-204ENST00000469003 ZNF658Q5TYW1 1059 aaPredicted RBP17.46■□□□□ 0.39
CCDC28B-204ENST00000469003 PMS2CLQ68D20 193 aa17.46■□□□□ 0.39
CCDC28B-204ENST00000469003 IL31Q6EBC2 164 aa17.46■□□□□ 0.39
CCDC28B-204ENST00000469003 NUDT18Q6ZVK8 323 aa17.46■□□□□ 0.39
CCDC28B-204ENST00000469003 CCDC186Q7Z3E2 898 aa17.46■□□□□ 0.39
CCDC28B-204ENST00000469003 ZNF276Q8N554 614 aa17.46■□□□□ 0.39
CCDC28B-204ENST00000469003 TERB1Q8NA31 727 aa17.46■□□□□ 0.39
CCDC28B-204ENST00000469003 OLIG1Q8TAK6 271 aa17.46■□□□□ 0.39
CCDC28B-204ENST00000469003 KCNV2Q8TDN2 545 aa17.46■□□□□ 0.39
CCDC28B-204ENST00000469003 DDX1Q92499 740 aaKnown RBP17.46■□□□□ 0.39
CCDC28B-204ENST00000469003 HEXIM2Q96MH2 286 aaKnown RBP17.46■□□□□ 0.39
CCDC28B-204ENST00000469003 GSDMAQ96QA5 445 aa17.46■□□□□ 0.39
CCDC28B-204ENST00000469003 SMOC1Q9H4F8 434 aa17.46■□□□□ 0.39
CCDC28B-204ENST00000469003 FAM124BQ9H5Z6 455 aaPredicted RBP17.46■□□□□ 0.39
CCDC28B-204ENST00000469003 RXFP3Q9NSD7 469 aa17.46■□□□□ 0.39
CCDC28B-204ENST00000469003 DNMT3LQ9UJW3 386 aa17.46■□□□□ 0.39
CCDC28B-204ENST00000469003 USP3Q9Y6I4 520 aa17.46■□□□□ 0.39
CCDC28B-204ENST00000469003 BAHCC1Q9P281 2608 aa17.46■□□□□ 0.39
CCDC28B-204ENST00000469003 BCLAF3A2AJT9 711 aaKnown RBP17.45■□□□□ 0.38
CCDC28B-204ENST00000469003 GOLGA6L4A6NEF3 574 aa17.45■□□□□ 0.38
CCDC28B-204ENST00000469003 ADAM23O75077 832 aa17.45■□□□□ 0.38
CCDC28B-204ENST00000469003 PLA2G4AP47712 749 aa17.45■□□□□ 0.38
CCDC28B-204ENST00000469003 CREB5Q02930 508 aa17.45■□□□□ 0.38
CCDC28B-204ENST00000469003 C10orf120Q5SQS8 335 aa17.45■□□□□ 0.38
CCDC28B-204ENST00000469003 TRMT11Q7Z4G4 463 aaKnown RBP17.45■□□□□ 0.38
CCDC28B-204ENST00000469003 TADA2BQ86TJ2 420 aa17.45■□□□□ 0.38
CCDC28B-204ENST00000469003 TTC30AQ86WT1 665 aa17.45■□□□□ 0.38
CCDC28B-204ENST00000469003 ZC3H3Q8IXZ2 948 aaKnown RBP17.45■□□□□ 0.38
CCDC28B-204ENST00000469003 SLC4A11Q8NBS3 891 aa17.45■□□□□ 0.38
CCDC28B-204ENST00000469003 TSG101Q99816 390 aa17.45■□□□□ 0.38
CCDC28B-204ENST00000469003 CISHQ9NSE2 258 aa17.45■□□□□ 0.38
CCDC28B-204ENST00000469003 MARK1Q9P0L2 795 aa17.45■□□□□ 0.38
CCDC28B-204ENST00000469003 NAGPAQ9UK23 515 aa17.45■□□□□ 0.38
CCDC28B-204ENST00000469003 THADAQ6YHU6 1953 aa17.45■□□□□ 0.38
CCDC28B-204ENST00000469003 ATRXP46100 2492 aa17.45■□□□□ 0.38
CCDC28B-204ENST00000469003 NUP205Q92621 2012 aa17.45■□□□□ 0.38
CCDC28B-204ENST00000469003 ABCA7Q8IZY2 2146 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms