RNA–Protein interactions for RNA: ENST00000439369.6

SCLT1-202, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 966 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-202ENST00000439369 CCL16O15467 120 aa13.27□□□□□ -0.29
SCLT1-202ENST00000439369 F11P03951 625 aa13.27□□□□□ -0.29
SCLT1-202ENST00000439369 GPD1P21695 349 aa13.27□□□□□ -0.29
SCLT1-202ENST00000439369 IGFBP4P22692 258 aa13.27□□□□□ -0.29
SCLT1-202ENST00000439369 DDX6P26196 483 aaKnown RBP eCLIP13.27□□□□□ -0.29
SCLT1-202ENST00000439369 ZNF143P52747 638 aaPredicted RBP13.27□□□□□ -0.29
SCLT1-202ENST00000439369 IFRD2Q12894 506 aaPredicted RBP13.27□□□□□ -0.29
SCLT1-202ENST00000439369 SLC25A52Q3SY17 297 aa13.27□□□□□ -0.29
SCLT1-202ENST00000439369 C11orf63Q6NUN7 778 aa13.27□□□□□ -0.29
SCLT1-202ENST00000439369 GPR149Q86SP6 731 aa13.27□□□□□ -0.29
SCLT1-202ENST00000439369 ZSCAN30Q86W11 494 aa13.27□□□□□ -0.29
SCLT1-202ENST00000439369 RNF139Q8WU17 664 aa13.27□□□□□ -0.29
SCLT1-202ENST00000439369 SMG7Q92540 1137 aaKnown RBP13.27□□□□□ -0.29
SCLT1-202ENST00000439369 MRPS31Q92665 395 aaKnown RBP13.27□□□□□ -0.29
SCLT1-202ENST00000439369 NT5C3BQ969T7 300 aa13.27□□□□□ -0.29
SCLT1-202ENST00000439369 PGAP3Q96FM1 320 aaPredicted RBP13.27□□□□□ -0.29
SCLT1-202ENST00000439369 ZNF334Q9HCZ1 680 aaPredicted RBP13.27□□□□□ -0.29
SCLT1-202ENST00000439369 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.27□□□□□ -0.29
SCLT1-202ENST00000439369 ANAPC7Q9UJX3 599 aa13.27□□□□□ -0.29
SCLT1-202ENST00000439369 COG5Q9UP83 839 aa13.27□□□□□ -0.29
SCLT1-202ENST00000439369 F9P00740 461 aa13.26□□□□□ -0.29
SCLT1-202ENST00000439369 FYNP06241 537 aa13.26□□□□□ -0.29
SCLT1-202ENST00000439369 RHOP08100 348 aa13.26□□□□□ -0.29
SCLT1-202ENST00000439369 PDGFRAP16234 1089 aa13.26□□□□□ -0.29
SCLT1-202ENST00000439369 MSNP26038 577 aaKnown RBP13.26□□□□□ -0.29
SCLT1-202ENST00000439369 SDC4P31431 198 aa13.26□□□□□ -0.29
SCLT1-202ENST00000439369 GTF2F1P35269 517 aaKnown RBP eCLIP13.26□□□□□ -0.29
SCLT1-202ENST00000439369 FLT3P36888 993 aa13.26□□□□□ -0.29
SCLT1-202ENST00000439369 SLC1A1P43005 524 aa13.26□□□□□ -0.29
SCLT1-202ENST00000439369 NOP2P46087 812 aaKnown RBP13.26□□□□□ -0.29
SCLT1-202ENST00000439369 KPNA1P52294 538 aaPredicted RBP13.26□□□□□ -0.29
SCLT1-202ENST00000439369 RPL7AP62424 266 aaKnown RBP13.26□□□□□ -0.29
SCLT1-202ENST00000439369 NNTQ13423 1086 aa13.26□□□□□ -0.29
SCLT1-202ENST00000439369 TAF5Q15542 800 aa13.26□□□□□ -0.29
SCLT1-202ENST00000439369 HECTD3Q5T447 861 aa13.26□□□□□ -0.29
SCLT1-202ENST00000439369 PDZD4Q76G19 769 aaPredicted RBP13.26□□□□□ -0.29
SCLT1-202ENST00000439369 STRADAQ7RTN6 431 aa13.26□□□□□ -0.29
SCLT1-202ENST00000439369 SYCE1Q8N0S2 351 aa13.26□□□□□ -0.29
SCLT1-202ENST00000439369 DEFB106AQ8N104 65 aa13.26□□□□□ -0.29
SCLT1-202ENST00000439369 TPCN2Q8NHX9 752 aa13.26□□□□□ -0.29
SCLT1-202ENST00000439369 JOSD2Q8TAC2 188 aa13.26□□□□□ -0.29
SCLT1-202ENST00000439369 RXFP2Q8WXD0 754 aa13.26□□□□□ -0.29
SCLT1-202ENST00000439369 NPY6RQ99463 290 aa13.26□□□□□ -0.29
SCLT1-202ENST00000439369 CDX2Q99626 313 aaPredicted RBP13.26□□□□□ -0.29
SCLT1-202ENST00000439369 CORO1BQ9BR76 489 aa13.26□□□□□ -0.29
SCLT1-202ENST00000439369 ADAM7Q9H2U9 754 aa13.26□□□□□ -0.29
SCLT1-202ENST00000439369 SMOC2Q9H3U7 446 aa13.26□□□□□ -0.29
SCLT1-202ENST00000439369 PIDD1Q9HB75 910 aa13.26□□□□□ -0.29
SCLT1-202ENST00000439369 NMUR1Q9HB89 426 aa13.26□□□□□ -0.29
SCLT1-202ENST00000439369 OSGEPQ9NPF4 335 aa13.26□□□□□ -0.29
SCLT1-202ENST00000439369 LZTFL1Q9NQ48 299 aa13.26□□□□□ -0.29
SCLT1-202ENST00000439369 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.26□□□□□ -0.29
SCLT1-202ENST00000439369 DNMT3BQ9UBC3 853 aaKnown RBP13.26□□□□□ -0.29
SCLT1-202ENST00000439369 CHORDC1Q9UHD1 332 aaPredicted RBP13.26□□□□□ -0.29
SCLT1-202ENST00000439369 GUCA1BQ9UMX6 200 aa13.26□□□□□ -0.29
SCLT1-202ENST00000439369 DUSP10Q9Y6W6 482 aa13.26□□□□□ -0.29
SCLT1-202ENST00000439369 CHD7Q9P2D1 2997 aa13.25□□□□□ -0.29
SCLT1-202ENST00000439369 MACROD2A1Z1Q3 448 aa13.25□□□□□ -0.29
SCLT1-202ENST00000439369 LINC01565O15544 149 aa13.25□□□□□ -0.29
SCLT1-202ENST00000439369 KIF5CO60282 957 aa13.25□□□□□ -0.29
SCLT1-202ENST00000439369 TLR5O60602 858 aa13.25□□□□□ -0.29
SCLT1-202ENST00000439369 TADA3O75528 432 aa13.25□□□□□ -0.29
SCLT1-202ENST00000439369 PROSCO94903 275 aa13.25□□□□□ -0.29
SCLT1-202ENST00000439369 ENDOD1O94919 500 aa13.25□□□□□ -0.29
SCLT1-202ENST00000439369 NCAM1P13591 858 aa13.25□□□□□ -0.29
SCLT1-202ENST00000439369 RARGP13631 454 aa13.25□□□□□ -0.29
SCLT1-202ENST00000439369 GABRR2P28476 465 aa13.25□□□□□ -0.29
SCLT1-202ENST00000439369 RNASE9P60153 205 aaKnown RBP13.25□□□□□ -0.29
SCLT1-202ENST00000439369 RBM10P98175 930 aaKnown RBP13.25□□□□□ -0.29
SCLT1-202ENST00000439369 MTA1Q13330 715 aa13.25□□□□□ -0.29
SCLT1-202ENST00000439369 ARHGAP15Q53QZ3 475 aa13.25□□□□□ -0.29
SCLT1-202ENST00000439369 DCAF6Q58WW2 860 aa13.25□□□□□ -0.29
SCLT1-202ENST00000439369 CES5AQ6NT32 575 aa13.25□□□□□ -0.29
SCLT1-202ENST00000439369 SYCE2Q6PIF2 218 aa13.25□□□□□ -0.29
SCLT1-202ENST00000439369 HFE2Q6ZVN8 426 aa13.25□□□□□ -0.29
SCLT1-202ENST00000439369 GAREM2Q75VX8 874 aa13.25□□□□□ -0.29
SCLT1-202ENST00000439369 RSRC2Q7L4I2 434 aaKnown RBP13.25□□□□□ -0.29
SCLT1-202ENST00000439369 BNIPLQ7Z465 357 aa13.25□□□□□ -0.29
SCLT1-202ENST00000439369 PHLDB2Q86SQ0 1253 aa13.25□□□□□ -0.29
SCLT1-202ENST00000439369 TMEM150AQ86TG1 271 aa13.25□□□□□ -0.29
SCLT1-202ENST00000439369 DEFB123Q8N688 67 aa13.25□□□□□ -0.29
SCLT1-202ENST00000439369 TRIM58Q8NG06 486 aa13.25□□□□□ -0.29
SCLT1-202ENST00000439369 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.25□□□□□ -0.29
SCLT1-202ENST00000439369 NDRG1Q92597 394 aaKnown RBP13.25□□□□□ -0.29
SCLT1-202ENST00000439369 CENPIQ92674 756 aaPredicted RBP13.25□□□□□ -0.29
SCLT1-202ENST00000439369 MSLNLQ96KJ4 702 aa13.25□□□□□ -0.29
SCLT1-202ENST00000439369 RIPOR3Q96MK2 946 aa13.25□□□□□ -0.29
SCLT1-202ENST00000439369 FAM161BQ96MY7 647 aa13.25□□□□□ -0.29
SCLT1-202ENST00000439369 ALS2CR12Q96Q35 445 aa13.25□□□□□ -0.29
SCLT1-202ENST00000439369 MTMR10Q9NXD2 777 aa13.25□□□□□ -0.29
SCLT1-202ENST00000439369 CLEC1BQ9P126 229 aa13.25□□□□□ -0.29
SCLT1-202ENST00000439369 SALL4Q9UJQ4 1053 aa13.25□□□□□ -0.29
SCLT1-202ENST00000439369 TFR2Q9UP52 801 aa13.25□□□□□ -0.29
SCLT1-202ENST00000439369 PAXBP1Q9Y5B6 917 aa13.25□□□□□ -0.29
SCLT1-202ENST00000439369 MYO16Q9Y6X6 1858 aa13.25□□□□□ -0.29
SCLT1-202ENST00000439369 A0A0U1RQJ8 604 aa13.24□□□□□ -0.29
SCLT1-202ENST00000439369 FAM170AA1A519 330 aa13.24□□□□□ -0.29
SCLT1-202ENST00000439369 BUB1BO60566 1050 aaPredicted RBP13.24□□□□□ -0.29
SCLT1-202ENST00000439369 GRAP2O75791 330 aa13.24□□□□□ -0.29
SCLT1-202ENST00000439369 RNF8O76064 485 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms