RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 WDTC1Q8N5D0 677 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 C12orf29Q8N999 325 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 ZNF784Q8NCA9 323 aaPredicted RBP8.73□□□□□ -1.01
USP54-203ENST00000418501 PRG3Q9Y2Y8 225 aaPredicted RBP8.73□□□□□ -1.01
USP54-203ENST00000418501 CASP8AP2Q9UKL3 1982 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 TBKBP1A7MCY6 615 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 CDKN2BP42772 138 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 FAM189BP81408 668 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 IFRD2Q12894 506 aaPredicted RBP8.73□□□□□ -1.01
USP54-203ENST00000418501 TTC30AQ86WT1 665 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 JOSD2Q8TAC2 188 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 CXorf38Q8TB03 319 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 NTAN1Q96AB6 310 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 TMEM169Q96HH4 297 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 RNF157Q96PX1 679 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 WDCPQ9H6R7 721 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.73□□□□□ -1.01
USP54-203ENST00000418501 HMGXB4Q9UGU5 601 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 ADAM28Q9UKQ2 775 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 MAFFQ9ULX9 164 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 ESYT3A0FGR9 886 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 MAGEA11P43364 429 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 OTUD4Q01804 1114 aaKnown RBP8.73□□□□□ -1.01
USP54-203ENST00000418501 CCNJLQ8IV13 435 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 ATP6V0D2Q8N8Y2 350 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 ATP11CQ8NB49 1132 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 KBTBD7Q8WVZ9 684 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 DYDC1Q8WWB3 177 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 UNC93B1Q9H1C4 597 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 GOLGA2P5Q9HBQ8 144 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 SENP1Q9P0U3 644 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 TYW5A2RUC4 315 aaKnown RBP8.73□□□□□ -1.01
USP54-203ENST00000418501 RASGRF2O14827 1237 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 PAPSS1O43252 624 aaPredicted RBP8.73□□□□□ -1.01
USP54-203ENST00000418501 GRAP2O75791 330 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 LAG3P18627 525 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 ACAT1P24752 427 aaKnown RBP8.73□□□□□ -1.01
USP54-203ENST00000418501 MARCKSL1P49006 195 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 NME3Q13232 169 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 TIGD5Q53EQ6 642 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 FBXO46Q6PJ61 603 aaPredicted RBP8.73□□□□□ -1.01
USP54-203ENST00000418501 NECAB2Q7Z6G3 386 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 ALLCQ8N6M5 410 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 PPP1R13LQ8WUF5 828 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 SEC14L1Q92503 715 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 ART4Q93070 314 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 FAF2Q96CS3 445 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 VAT1Q99536 393 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 ULBP1Q9BZM6 244 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 TLR8Q9NR97 1041 aaKnown RBP8.73□□□□□ -1.01
USP54-203ENST00000418501 NKIRAS1Q9NYS0 192 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 OGDHLQ9ULD0 1010 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 DNALI1O14645 258 aaPredicted RBP8.72□□□□□ -1.01
USP54-203ENST00000418501 PPFIA2O75334 1257 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 GSTA2P09210 222 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 TRIM71Q2Q1W2 868 aaKnown RBP8.72□□□□□ -1.01
USP54-203ENST00000418501 USP41Q3LFD5 358 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 FAM171A1Q5VUB5 890 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 ACTL9Q8TC94 416 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 VPS37BQ9H9H4 285 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 DDIT4Q9NX09 232 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 ATP11BQ9Y2G3 1177 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 CLUHO75153 1309 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 ZSWIM8A7E2V4 1837 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 PPEF2O14830 753 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 FGF10O15520 208 aaPredicted RBP8.72□□□□□ -1.01
USP54-203ENST00000418501 DNAJB2P25686 324 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 GGCXP38435 758 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 VPS41P49754 854 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 BASP1P80723 227 aaKnown RBP8.72□□□□□ -1.01
USP54-203ENST00000418501 ILF2Q12905 390 aaKnown RBP8.72□□□□□ -1.01
USP54-203ENST00000418501 ANO4Q32M45 955 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 PKDCCQ504Y2 493 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 ANKRD20A8PQ5CZ79 823 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 DCAF12L1Q5VU92 463 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 ELMOD1Q8N336 334 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 PYROXD1Q8WU10 500 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 TFB1MQ8WVM0 346 aaKnown RBP8.72□□□□□ -1.01
USP54-203ENST00000418501 CDKL2Q92772 493 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 ATP6V1G3Q96LB4 118 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 GDAP1L1Q96MZ0 367 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 ZNF558Q96NG5 402 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 GCNAQ96QF7 691 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.72□□□□□ -1.01
USP54-203ENST00000418501 TLDC2A0PJX2 215 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 AGTP01019 485 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 CYP2F1P24903 491 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 CCR1P32246 355 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 HCAR3P49019 387 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 ITGA8P53708 1063 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 DAOAP59103 153 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 CDK16Q00536 496 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 SOX4Q06945 474 aaPredicted RBP8.72□□□□□ -1.01
USP54-203ENST00000418501 HIF1AQ16665 826 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 SMTNL2Q2TAL5 461 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 LIMS2Q7Z4I7 341 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 MON1AQ86VX9 555 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 FUKQ8N0W3 1084 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 NUP93Q8N1F7 819 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 DBF4BQ8NFT6 615 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms