RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 CCDC26Q8TAB7 109 aa12.22□□□□□ -0.45
USP4-204ENST00000416417 OLIG1Q8TAK6 271 aa12.22□□□□□ -0.45
USP4-204ENST00000416417 WHAMMQ8TF30 809 aa12.22□□□□□ -0.45
USP4-204ENST00000416417 CYFIP2Q96F07 1278 aa12.22□□□□□ -0.45
USP4-204ENST00000416417 P2RY11Q96G91 374 aa12.22□□□□□ -0.45
USP4-204ENST00000416417 ACOX2Q99424 681 aa12.22□□□□□ -0.45
USP4-204ENST00000416417 LSM14BQ9BX40 385 aaKnown RBP12.22□□□□□ -0.45
USP4-204ENST00000416417 KLF16Q9BXK1 252 aaPredicted RBP12.22□□□□□ -0.45
USP4-204ENST00000416417 FSCN3Q9NQT6 498 aa12.22□□□□□ -0.45
USP4-204ENST00000416417 TRAF3IP3Q9Y228 551 aa12.22□□□□□ -0.45
USP4-204ENST00000416417 SPAG17Q6Q759 2223 aa12.22□□□□□ -0.45
USP4-204ENST00000416417 HOXC11O43248 304 aaPredicted RBP12.21□□□□□ -0.45
USP4-204ENST00000416417 MAP3K13O43283 966 aa12.21□□□□□ -0.45
USP4-204ENST00000416417 ALDH1A2O94788 518 aa12.21□□□□□ -0.45
USP4-204ENST00000416417 KCNK5O95279 499 aa12.21□□□□□ -0.45
USP4-204ENST00000416417 EIF2DP41214 584 aaKnown RBP12.21□□□□□ -0.45
USP4-204ENST00000416417 P2RY2P41231 377 aa12.21□□□□□ -0.45
USP4-204ENST00000416417 PTGER3P43115 390 aa12.21□□□□□ -0.45
USP4-204ENST00000416417 TNFRSF4P43489 277 aa12.21□□□□□ -0.45
USP4-204ENST00000416417 DPYDQ12882 1025 aa12.21□□□□□ -0.45
USP4-204ENST00000416417 EOGTQ5NDL2 527 aa12.21□□□□□ -0.45
USP4-204ENST00000416417 EGFLAMQ63HQ2 1017 aa12.21□□□□□ -0.45
USP4-204ENST00000416417 TOGARAM2Q6ZUX3 1019 aa12.21□□□□□ -0.45
USP4-204ENST00000416417 UNC93AQ86WB7 457 aa12.21□□□□□ -0.45
USP4-204ENST00000416417 FAM186BQ8IYM0 893 aa12.21□□□□□ -0.45
USP4-204ENST00000416417 ZNF513Q8N8E2 541 aaPredicted RBP12.21□□□□□ -0.45
USP4-204ENST00000416417 SEMA4DQ92854 862 aa12.21□□□□□ -0.45
USP4-204ENST00000416417 SLC6A17Q9H1V8 727 aa12.21□□□□□ -0.45
USP4-204ENST00000416417 POLMQ9NP87 494 aaPredicted RBP12.21□□□□□ -0.45
USP4-204ENST00000416417 TLR8Q9NR97 1041 aaKnown RBP12.21□□□□□ -0.45
USP4-204ENST00000416417 TMEM74BQ9NUR3 256 aa12.21□□□□□ -0.45
USP4-204ENST00000416417 DNAJC17Q9NVM6 304 aaKnown RBP12.21□□□□□ -0.45
USP4-204ENST00000416417 PLK2Q9NYY3 685 aa12.21□□□□□ -0.45
USP4-204ENST00000416417 DEC1Q9P2X7 70 aa12.21□□□□□ -0.45
USP4-204ENST00000416417 ABCA7Q8IZY2 2146 aa12.21□□□□□ -0.45
USP4-204ENST00000416417 A0A0A0MRY4 1105 aa12.21□□□□□ -0.46
USP4-204ENST00000416417 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.21□□□□□ -0.46
USP4-204ENST00000416417 IKBKBO14920 756 aa12.21□□□□□ -0.46
USP4-204ENST00000416417 KHNYNO15037 678 aaKnown RBP12.21□□□□□ -0.46
USP4-204ENST00000416417 RHOBTB3O94955 611 aa12.21□□□□□ -0.46
USP4-204ENST00000416417 HMBSP08397 361 aa12.21□□□□□ -0.46
USP4-204ENST00000416417 RARGP13631 454 aa12.21□□□□□ -0.46
USP4-204ENST00000416417 TUBP50607 506 aa12.21□□□□□ -0.46
USP4-204ENST00000416417 KRT85P78386 507 aa12.21□□□□□ -0.46
USP4-204ENST00000416417 MAP7D1Q3KQU3 841 aa12.21□□□□□ -0.46
USP4-204ENST00000416417 UAP1L1Q3KQV9 507 aa12.21□□□□□ -0.46
USP4-204ENST00000416417 PPP1R26Q5T8A7 1209 aaPredicted RBP12.21□□□□□ -0.46
USP4-204ENST00000416417 KRBA2Q6ZNG9 492 aa12.21□□□□□ -0.46
USP4-204ENST00000416417 SCD5Q86SK9 330 aa12.21□□□□□ -0.46
USP4-204ENST00000416417 KIAA1958Q8N8K9 716 aa12.21□□□□□ -0.46
USP4-204ENST00000416417 TERB1Q8NA31 727 aa12.21□□□□□ -0.46
USP4-204ENST00000416417 TMEM174Q8WUU8 243 aa12.21□□□□□ -0.46
USP4-204ENST00000416417 DDX1Q92499 740 aaKnown RBP12.21□□□□□ -0.46
USP4-204ENST00000416417 TAF4BQ92750 862 aa12.21□□□□□ -0.46
USP4-204ENST00000416417 OTUB2Q96DC9 234 aa12.21□□□□□ -0.46
USP4-204ENST00000416417 HNRNPABQ99729 332 aaKnown RBP12.21□□□□□ -0.46
USP4-204ENST00000416417 BBS2Q9BXC9 721 aa12.21□□□□□ -0.46
USP4-204ENST00000416417 NT5C1AQ9BXI3 368 aa12.21□□□□□ -0.46
USP4-204ENST00000416417 FBXO44Q9H4M3 255 aa12.21□□□□□ -0.46
USP4-204ENST00000416417 COMMD8Q9NX08 183 aa12.21□□□□□ -0.46
USP4-204ENST00000416417 USP25Q9UHP3 1055 aa12.21□□□□□ -0.46
USP4-204ENST00000416417 SCML2Q9UQR0 700 aa12.21□□□□□ -0.46
USP4-204ENST00000416417 RAD54BQ9Y620 910 aa12.21□□□□□ -0.46
USP4-204ENST00000416417 PRRT4C9JH25 899 aa12.2□□□□□ -0.46
USP4-204ENST00000416417 CDX4O14627 284 aaPredicted RBP12.2□□□□□ -0.46
USP4-204ENST00000416417 CILPO75339 1184 aa12.2□□□□□ -0.46
USP4-204ENST00000416417 KRT13P13646 458 aa12.2□□□□□ -0.46
USP4-204ENST00000416417 TYRP14679 529 aa12.2□□□□□ -0.46
USP4-204ENST00000416417 GABRG2P18507 467 aa12.2□□□□□ -0.46
USP4-204ENST00000416417 SPINK2P20155 84 aa12.2□□□□□ -0.46
USP4-204ENST00000416417 PMLP29590 882 aa12.2□□□□□ -0.46
USP4-204ENST00000416417 ATP5C1P36542 298 aaKnown RBP12.2□□□□□ -0.46
USP4-204ENST00000416417 NOVA1P51513 510 aaKnown RBP12.2□□□□□ -0.46
USP4-204ENST00000416417 INCA1Q0VD86 236 aa12.2□□□□□ -0.46
USP4-204ENST00000416417 ADAM9Q13443 819 aa12.2□□□□□ -0.46
USP4-204ENST00000416417 ST3GAL2Q16842 350 aa12.2□□□□□ -0.46
USP4-204ENST00000416417 C10orf120Q5SQS8 335 aa12.2□□□□□ -0.46
USP4-204ENST00000416417 GRAMD4Q6IC98 578 aa12.2□□□□□ -0.46
USP4-204ENST00000416417 KIAA1211LQ6NV74 962 aa12.2□□□□□ -0.46
USP4-204ENST00000416417 HTR3DQ70Z44 454 aa12.2□□□□□ -0.46
USP4-204ENST00000416417 LPCAT2Q7L5N7 544 aa12.2□□□□□ -0.46
USP4-204ENST00000416417 ARID3AQ99856 593 aa12.2□□□□□ -0.46
USP4-204ENST00000416417 NIF3L1Q9GZT8 377 aa12.2□□□□□ -0.46
USP4-204ENST00000416417 CD93Q9NPY3 652 aa12.2□□□□□ -0.46
USP4-204ENST00000416417 NAGPAQ9UK23 515 aa12.2□□□□□ -0.46
USP4-204ENST00000416417 THADAQ6YHU6 1953 aa12.19□□□□□ -0.46
USP4-204ENST00000416417 FAM237AA0A1B0GTK4 181 aa12.19□□□□□ -0.46
USP4-204ENST00000416417 A0A1W2PQF6 199 aa12.19□□□□□ -0.46
USP4-204ENST00000416417 WASH3PC4AMC7 463 aa12.19□□□□□ -0.46
USP4-204ENST00000416417 TOP3BO95985 862 aaKnown RBP12.19□□□□□ -0.46
USP4-204ENST00000416417 HOXB2P14652 356 aa12.19□□□□□ -0.46
USP4-204ENST00000416417 ITPKAP23677 461 aa12.19□□□□□ -0.46
USP4-204ENST00000416417 PSMC2P35998 433 aaKnown RBP12.19□□□□□ -0.46
USP4-204ENST00000416417 MAPK8P45983 427 aa12.19□□□□□ -0.46
USP4-204ENST00000416417 TRIM61Q5EBN2 209 aa12.19□□□□□ -0.46
USP4-204ENST00000416417 SH3PXD2AQ5TCZ1 1133 aa12.19□□□□□ -0.46
USP4-204ENST00000416417 INTS8Q75QN2 995 aaKnown RBP12.19□□□□□ -0.46
USP4-204ENST00000416417 NDRG1Q92597 394 aaKnown RBP12.19□□□□□ -0.46
USP4-204ENST00000416417 ERCC4Q92889 916 aaPredicted RBP12.19□□□□□ -0.46
USP4-204ENST00000416417 TATDN2Q93075 761 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms