RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 NOMO2Q5JPE7 1267 aa19.76■□□□□ 0.75
USP39-202ENST00000409025 CLLU1OSQ5K130 101 aa19.76■□□□□ 0.75
USP39-202ENST00000409025 AGBL2Q5U5Z8 902 aa19.76■□□□□ 0.75
USP39-202ENST00000409025 OVOS1Q6IE37 1185 aa19.76■□□□□ 0.75
USP39-202ENST00000409025 FAM171BQ6P995 826 aa19.76■□□□□ 0.75
USP39-202ENST00000409025 SH2D3CQ8N5H7 860 aa19.76■□□□□ 0.75
USP39-202ENST00000409025 KCNK16Q96T55 309 aa19.76■□□□□ 0.75
USP39-202ENST00000409025 ADAM33Q9BZ11 813 aa19.76■□□□□ 0.75
USP39-202ENST00000409025 ULBP1Q9BZM6 244 aa19.76■□□□□ 0.75
USP39-202ENST00000409025 ADAM7Q9H2U9 754 aa19.76■□□□□ 0.75
USP39-202ENST00000409025 CDC42EP4Q9H3Q1 356 aaKnown RBP19.76■□□□□ 0.75
USP39-202ENST00000409025 CNGB3Q9NQW8 809 aa19.76■□□□□ 0.75
USP39-202ENST00000409025 KANSL3Q9P2N6 904 aa19.76■□□□□ 0.75
USP39-202ENST00000409025 AP4E1Q9UPM8 1137 aa19.76■□□□□ 0.75
USP39-202ENST00000409025 CENPFP49454 3210 aa19.75■□□□□ 0.75
USP39-202ENST00000409025 RBP3P10745 1247 aa19.75■□□□□ 0.75
USP39-202ENST00000409025 TYMPP19971 482 aa19.75■□□□□ 0.75
USP39-202ENST00000409025 ATXN1P54253 815 aaKnown RBP19.75■□□□□ 0.75
USP39-202ENST00000409025 PPP6R3Q5H9R7 873 aaPredicted RBP19.75■□□□□ 0.75
USP39-202ENST00000409025 RAB41Q5JT25 222 aa19.75■□□□□ 0.75
USP39-202ENST00000409025 CROCCP2Q86T23 111 aa19.75■□□□□ 0.75
USP39-202ENST00000409025 ZMIZ2Q8NF64 920 aa19.75■□□□□ 0.75
USP39-202ENST00000409025 SLC2A13Q96QE2 648 aa19.75■□□□□ 0.75
USP39-202ENST00000409025 UNC93B1Q9H1C4 597 aa19.75■□□□□ 0.75
USP39-202ENST00000409025 DHX35Q9H5Z1 703 aaKnown RBP19.75■□□□□ 0.75
USP39-202ENST00000409025 POPDC2Q9HBU9 364 aa19.75■□□□□ 0.75
USP39-202ENST00000409025 SHBGP04278 402 aa19.74■□□□□ 0.75
USP39-202ENST00000409025 ITGB1P05556 798 aa19.74■□□□□ 0.75
USP39-202ENST00000409025 L1CAMP32004 1257 aa19.74■□□□□ 0.75
USP39-202ENST00000409025 RDXP35241 583 aaKnown RBP19.74■□□□□ 0.75
USP39-202ENST00000409025 DAOAP59103 153 aa19.74■□□□□ 0.75
USP39-202ENST00000409025 MAPRE1Q15691 268 aaKnown RBP19.74■□□□□ 0.75
USP39-202ENST00000409025 SLC9A4Q6AI14 798 aa19.74■□□□□ 0.75
USP39-202ENST00000409025 NPNTQ6UXI9 565 aa19.74■□□□□ 0.75
USP39-202ENST00000409025 ZNF771Q7L3S4 317 aaPredicted RBP19.74■□□□□ 0.75
USP39-202ENST00000409025 PCGF5Q86SE9 256 aa19.74■□□□□ 0.75
USP39-202ENST00000409025 ZCCHC9Q8N567 271 aaKnown RBP19.74■□□□□ 0.75
USP39-202ENST00000409025 FAF2Q96CS3 445 aa19.74■□□□□ 0.75
USP39-202ENST00000409025 CSNK1G1Q9HCP0 422 aa19.74■□□□□ 0.75
USP39-202ENST00000409025 BCCIPQ9P287 314 aaKnown RBP eCLIP19.74■□□□□ 0.75
USP39-202ENST00000409025 PCDHB8Q9UN66 801 aa19.74■□□□□ 0.75
USP39-202ENST00000409025 DDHD2O94830 711 aa19.74■□□□□ 0.75
USP39-202ENST00000409025 COL6A1P12109 1028 aa19.74■□□□□ 0.75
USP39-202ENST00000409025 CACNA2D1P54289 1103 aa19.74■□□□□ 0.75
USP39-202ENST00000409025 BCAR1P56945 870 aa19.74■□□□□ 0.75
USP39-202ENST00000409025 TSPY1Q01534 308 aa19.74■□□□□ 0.75
USP39-202ENST00000409025 ROR1Q01973 937 aa19.74■□□□□ 0.75
USP39-202ENST00000409025 DSC1Q08554 894 aa19.74■□□□□ 0.75
USP39-202ENST00000409025 MORF4L2Q15014 288 aa19.74■□□□□ 0.75
USP39-202ENST00000409025 DARS2Q6PI48 645 aaKnown RBP19.74■□□□□ 0.75
USP39-202ENST00000409025 C1orf228Q6PIY5 440 aa19.74■□□□□ 0.75
USP39-202ENST00000409025 ZNF280BQ86YH2 543 aa19.74■□□□□ 0.75
USP39-202ENST00000409025 FAM126BQ8IXS8 530 aa19.74■□□□□ 0.75
USP39-202ENST00000409025 CCDC185Q8N715 623 aa19.74■□□□□ 0.75
USP39-202ENST00000409025 PQLC3Q8N755 202 aa19.74■□□□□ 0.75
USP39-202ENST00000409025 PLD5Q8N7P1 536 aa19.74■□□□□ 0.75
USP39-202ENST00000409025 PCDH19Q8TAB3 1148 aa19.74■□□□□ 0.75
USP39-202ENST00000409025 NT5C3BQ969T7 300 aa19.74■□□□□ 0.75
USP39-202ENST00000409025 NPY6RQ99463 290 aa19.74■□□□□ 0.75
USP39-202ENST00000409025 C10orf88Q9H8K7 445 aa19.74■□□□□ 0.75
USP39-202ENST00000409025 TMEM161AQ9NX61 479 aa19.74■□□□□ 0.75
USP39-202ENST00000409025 CAPN9O14815 690 aa19.73■□□□□ 0.75
USP39-202ENST00000409025 CYP2F1P24903 491 aa19.73■□□□□ 0.75
USP39-202ENST00000409025 STIP1P31948 543 aaKnown RBP19.73■□□□□ 0.75
USP39-202ENST00000409025 RABGGTBP53611 331 aa19.73■□□□□ 0.75
USP39-202ENST00000409025 GDF10P55107 478 aa19.73■□□□□ 0.75
USP39-202ENST00000409025 RNASELQ05823 741 aaKnown RBP19.73■□□□□ 0.75
USP39-202ENST00000409025 GPRIN1Q7Z2K8 1008 aa19.73■□□□□ 0.75
USP39-202ENST00000409025 PSTKQ8IV42 348 aaKnown RBP19.73■□□□□ 0.75
USP39-202ENST00000409025 UNC45BQ8IWX7 931 aa19.73■□□□□ 0.75
USP39-202ENST00000409025 FAM193BQ96PV7 902 aaPredicted RBP19.73■□□□□ 0.75
USP39-202ENST00000409025 PKMYT1Q99640 499 aa19.73■□□□□ 0.75
USP39-202ENST00000409025 TMEM30AQ9NV96 361 aa19.73■□□□□ 0.75
USP39-202ENST00000409025 DNAJC17Q9NVM6 304 aaKnown RBP19.73■□□□□ 0.75
USP39-202ENST00000409025 HHLA1C9JL84 531 aa19.72■□□□□ 0.75
USP39-202ENST00000409025 H7C0C1 242 aa19.72■□□□□ 0.75
USP39-202ENST00000409025 NRP1O14786 923 aa19.72■□□□□ 0.75
USP39-202ENST00000409025 TTC4O95801 387 aa19.72■□□□□ 0.75
USP39-202ENST00000409025 ZFXP17010 805 aaPredicted RBP19.72■□□□□ 0.75
USP39-202ENST00000409025 NR1D1P20393 614 aa19.72■□□□□ 0.75
USP39-202ENST00000409025 ATP5OP48047 213 aa19.72■□□□□ 0.75
USP39-202ENST00000409025 DNAJC21Q5F1R6 531 aaKnown RBP19.72■□□□□ 0.75
USP39-202ENST00000409025 RNASEH2BQ5TBB1 312 aaKnown RBP19.72■□□□□ 0.75
USP39-202ENST00000409025 HFE2Q6ZVN8 426 aa19.72■□□□□ 0.75
USP39-202ENST00000409025 ZC3H18Q86VM9 953 aaKnown RBP19.72■□□□□ 0.75
USP39-202ENST00000409025 FAM131BQ86XD5 332 aa19.72■□□□□ 0.75
USP39-202ENST00000409025 RELL1Q8IUW5 271 aa19.72■□□□□ 0.75
USP39-202ENST00000409025 COLGALT2Q8IYK4 626 aa19.72■□□□□ 0.75
USP39-202ENST00000409025 OR10T2Q8NGX3 314 aa19.72■□□□□ 0.75
USP39-202ENST00000409025 PWWP2AQ96N64 755 aa19.72■□□□□ 0.75
USP39-202ENST00000409025 KCTD15Q96SI1 283 aaPredicted RBP19.72■□□□□ 0.75
USP39-202ENST00000409025 TMEM109Q9BVC6 243 aa19.72■□□□□ 0.75
USP39-202ENST00000409025 RHOBTB2Q9BYZ6 727 aa19.72■□□□□ 0.75
USP39-202ENST00000409025 NRDE2Q9H7Z3 1164 aa19.72■□□□□ 0.75
USP39-202ENST00000409025 TBC1D13Q9NVG8 400 aa19.72■□□□□ 0.75
USP39-202ENST00000409025 CALCOCO1Q9P1Z2 691 aa19.72■□□□□ 0.75
USP39-202ENST00000409025 FZD10Q9ULW2 581 aa19.72■□□□□ 0.75
USP39-202ENST00000409025 SHOC2Q9UQ13 582 aa19.72■□□□□ 0.75
USP39-202ENST00000409025 F8W810 466 aa19.72■□□□□ 0.75
USP39-202ENST00000409025 TMEM189-UBE2V1I3L0A0 370 aa19.72■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms